Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b18r
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-8|CAB03798.1| 299|Caenorhabditis elegans Hypothetical pr... 198 2e-51
AL031630-23|CAA21003.1| 299|Caenorhabditis elegans Hypothetical... 198 2e-51
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 29 3.2
AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical... 29 4.2
EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c pro... 28 5.6
EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b pro... 28 5.6
AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical ... 28 5.6
AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical ... 28 5.6
AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical ... 28 5.6
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 28 7.4
AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore... 28 7.4
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 28 7.4
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z75547-2|CAA99909.2| 622|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z75547-1|CAA99908.2| 621|Caenorhabditis elegans Hypothetical pr... 27 9.8
AC006610-1|AAK85447.4| 360|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z81453-8|CAB03798.1| 299|Caenorhabditis elegans Hypothetical
protein B0250.5 protein.
Length = 299
Score = 198 bits (484), Expect = 2e-51
Identities = 101/232 (43%), Positives = 143/232 (61%), Gaps = 2/232 (0%)
Frame = -2
Query: 693 VVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAP 514
++++L S+ V VY G+ G+ + G+L +DSSTID V ++ A + DAP
Sbjct: 61 IITVLPSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAP 120
Query: 513 VSGGVMGAQNATLAFMAG-GRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMG 337
+SGGV GAQ ATL FM G G F+R+ +L +MG + G +G+G AK+ NNML+G
Sbjct: 121 ISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLG 180
Query: 336 ITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGF 157
I +A AE MN+GI MGL+ K L ++N SS R WS++ Y PVPG++ PS R Y GGF
Sbjct: 181 IQMVAVAETMNLGISMGLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENIPSCRGYAGGF 240
Query: 156 KNELMVKDLELASGMALGIRSPIPLGAVATQLYRIV-QSRGYGQKDFSFVFQ 4
LM KDL LA + ++P P+G++A Q+YRI+ + Y KDF V+Q
Sbjct: 241 GTTLMAKDLSLAQNASTNTQAPTPMGSLAHQIYRILARDPQYQAKDFGVVYQ 292
>AL031630-23|CAA21003.1| 299|Caenorhabditis elegans Hypothetical
protein B0250.5 protein.
Length = 299
Score = 198 bits (484), Expect = 2e-51
Identities = 101/232 (43%), Positives = 143/232 (61%), Gaps = 2/232 (0%)
Frame = -2
Query: 693 VVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAP 514
++++L S+ V VY G+ G+ + G+L +DSSTID V ++ A + DAP
Sbjct: 61 IITVLPSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAP 120
Query: 513 VSGGVMGAQNATLAFMAG-GRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMG 337
+SGGV GAQ ATL FM G G F+R+ +L +MG + G +G+G AK+ NNML+G
Sbjct: 121 ISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLG 180
Query: 336 ITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGF 157
I +A AE MN+GI MGL+ K L ++N SS R WS++ Y PVPG++ PS R Y GGF
Sbjct: 181 IQMVAVAETMNLGISMGLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENIPSCRGYAGGF 240
Query: 156 KNELMVKDLELASGMALGIRSPIPLGAVATQLYRIV-QSRGYGQKDFSFVFQ 4
LM KDL LA + ++P P+G++A Q+YRI+ + Y KDF V+Q
Sbjct: 241 GTTLMAKDLSLAQNASTNTQAPTPMGSLAHQIYRILARDPQYQAKDFGVVYQ 292
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +2
Query: 371 CPEPICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRA 550
C E ICPQ P + GR + +PPA +R P T + P+P S+
Sbjct: 991 CEECICPQ-TAPTPPHVPTGRPTTVGQAQPPASSSRRVTEVGPPAPRTTEAAPPAPSSQP 1049
Query: 551 IGKICLGT 574
+ + T
Sbjct: 1050 PRQFAVNT 1057
>AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical
protein Y71H2AM.2 protein.
Length = 300
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 338 PINMLLVSLATCPEPICPQWNCLAPITLRRGRDLSKSSLRPP 463
P N LL+ A+ CP+ NC ITL RD +++R P
Sbjct: 103 PCNCLLICKASSTRIACPRNNCRRVITLAGQRD-PGTAIRAP 143
>EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c
protein.
Length = 765
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 251 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 418
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 607 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 661
>EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b
protein.
Length = 818
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 251 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 418
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 660 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 714
>AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical
protein Y55D9A.1c protein.
Length = 765
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 251 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 418
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 607 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 661
>AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical
protein Y55D9A.1b protein.
Length = 818
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 251 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 418
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 660 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 714
>AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical
protein Y55D9A.1a protein.
Length = 816
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 251 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 418
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 658 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 712
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
protein T01D3.7 protein.
Length = 2882
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -2
Query: 156 KNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYG 31
+++L++K++++ +G GI P G + Q + GYG
Sbjct: 459 RDDLLIKNVKIQNGAGSGIDFMTPTGNIELQNIEVKNMGGYG 500
>AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform b protein.
Length = 392
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -2
Query: 507 GGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 334
GG+ G + AF+ G +E F+ + M Q +HC + G + A T N L
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324
Query: 333 TGMAT 319
AT
Sbjct: 325 PQCAT 329
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -2
Query: 507 GGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 334
GG+ G + AF+ G +E F+ + M Q +HC + G + A T N L
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324
Query: 333 TGMAT 319
AT
Sbjct: 325 PQCAT 329
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 588 YSNRSEAILFSHEPQRHLCPGTRRARL 668
++ SEA+++ H PQ + PGT A +
Sbjct: 1469 FTRNSEAVMWLHSPQHAVVPGTPIAEI 1495
>Z75547-2|CAA99909.2| 622|Caenorhabditis elegans Hypothetical
protein R11D1.1b protein.
Length = 622
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 382 DLSAVELLSSHHFEERKGPFEVF--FTTSGHEGQGSVLSTHD 501
D+ E +H+F R+GP ++F +G E +L HD
Sbjct: 491 DMMDNEADDNHYFRRRRGPLQLFVLLQRAGEEHLARMLEEHD 532
>Z75547-1|CAA99908.2| 621|Caenorhabditis elegans Hypothetical
protein R11D1.1a protein.
Length = 621
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 382 DLSAVELLSSHHFEERKGPFEVF--FTTSGHEGQGSVLSTHD 501
D+ E +H+F R+GP ++F +G E +L HD
Sbjct: 490 DMMDNEADDNHYFRRRRGPLQLFVLLQRAGEEHLARMLEEHD 531
>AC006610-1|AAK85447.4| 360|Caenorhabditis elegans Hypothetical
protein C30F12.1 protein.
Length = 360
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 440 SKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRAI 553
S SS RP +A +P T T + NP P RA+
Sbjct: 191 SSSSHRPIRQSVSIATSSPATSSSTPSKYNPDPSLRAV 228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,439,601
Number of Sequences: 27780
Number of extensions: 424582
Number of successful extensions: 1226
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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