Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b18f
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)      62   3e-10
SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   8e-08
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)          31   0.81 
SB_11957| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_23929| Best HMM Match : PT (HMM E-Value=0.21)                       28   4.3  
SB_29310| Best HMM Match : RGS (HMM E-Value=0.86)                      28   5.7  
SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)                      28   5.7  
SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)                    27   7.6  
SB_30657| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_7271| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)
          Length = 270

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 43/127 (33%), Positives = 64/127 (50%)
 Frame = +3

Query: 165 MGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVV 344
           MG  MA NL+ +G+ V  +D   ++++   + G   A +            ++L S+ V 
Sbjct: 1   MGSPMAKNLLDQGYGVVVHDIFPESVDDLRQLGAGVAETPDEVAMKTNKIVTMLPSSSV- 59

Query: 345 LDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNA 524
                         + G+LLID STIDP + K+I  +A EKG  + DAPVSGG+  A+  
Sbjct: 60  --------------QDGTLLIDCSTIDPALSKEISEMASEKGATYLDAPVSGGITAAKAG 105

Query: 525 TLAFMAG 545
           TL FM G
Sbjct: 106 TLTFMVG 112


>SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 35/128 (27%), Positives = 61/128 (47%)
 Frame = +3

Query: 120 SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXX 299
           +S + + V  +G GN+G  +A  L K   +V+ +D  ++  N     G T  NS      
Sbjct: 3   TSASPRTVGLVGTGNVGSAVAVGLRKIDVSVKAFDLQQNNYNFLESTGTTLVNSPEEVTK 62

Query: 300 XXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGF 479
                 + L   + V    L   G+++  K+GS+ ID +T D N   ++  +A  KG+  
Sbjct: 63  DVDVLITALPKPQHVKSA-LEDTGMLSMLKEGSVWIDHTTTDYNETIRLGELATSKGVHA 121

Query: 480 TDAPVSGG 503
            +AP++GG
Sbjct: 122 VEAPLTGG 129


>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
          Length = 401

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 135 KNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKN 260
           K +A +GLG +G  +A  +   G    GYDP     +AA  N
Sbjct: 9   KTLAIIGLGRIGREVALRMQSYGVKTIGYDPLVSPQDAAESN 50


>SB_11957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 166 WEGSWLRTWLKRVSQFA 216
           W+G+WL++W K  SQ+A
Sbjct: 281 WKGTWLKSWEKLPSQYA 297


>SB_23929| Best HMM Match : PT (HMM E-Value=0.21)
          Length = 125

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 192 PSSQP*TLPCFRGRGKPHSCRC*NYTPVWRLCTNTE 85
           P SQP + P  R   +PHS       P WRL T+TE
Sbjct: 26  PVSQPVSQPVSRATPRPHS------APKWRLNTSTE 55


>SB_29310| Best HMM Match : RGS (HMM E-Value=0.86)
          Length = 1013

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 419 NRSECSQTDLPYSPRERAGIHRC 487
           N SEC + + P   RERA + RC
Sbjct: 46  NASECMERNGPKGKRERASVDRC 68


>SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)
          Length = 207

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 120 SSNTDKNVAFLGLGNMGGFMAANLVKKGFT-VRGYDPSKDALNAAAKNGV 266
           S    ++   L +G+  G  A  LVK GFT +   DPS+ +   A K  +
Sbjct: 61  SQGFSEDCRILDVGSGTGLQAEGLVKHGFTNIDALDPSEKSHEVARKKNL 110


>SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1585

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 419 NRSECSQTDLPYSPRERAGIHRC 487
           N SEC + + P   RERA + RC
Sbjct: 206 NASECMERNGPKGKRERASVDRC 228


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 395 IASDRFEYNRSECSQTDLPYSPRERAGIHRCTCI 496
           IA  R +  + E  +TDLP +P+    I RC C+
Sbjct: 271 IAGWRLDKEKLEPIKTDLPPAPQSLLQIVRCNCM 304


>SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 459

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 482 CESQPFL*GYREDLFGNIRIYCTRIDQKRSFFRMSH 375
           C+    L   R  +F  IR++ ++ID+KR   + +H
Sbjct: 67  CDKDKVLHFERGAIFNQIRLFVSKIDEKRGAIKETH 102


>SB_30657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 117 TPVWRLCTNTECLIWCAR 64
           TP W +C   ECL WC R
Sbjct: 17  TPTWEMCLFYECL-WCFR 33


>SB_7271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 7/33 (21%), Positives = 14/33 (42%)
 Frame = +1

Query: 142 WLSSASETWEGSWLRTWLKRVSQFAATILPKMH 240
           W+    + W   W+  W+  +    A + P +H
Sbjct: 28  WMDGWMDGWMDGWMDGWMDVIDVLCAVLFPDLH 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,834,375
Number of Sequences: 59808
Number of extensions: 466502
Number of successful extensions: 1404
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)