Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b18f
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              25   0.50 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.2  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 245 VQCIFGRIVAANCETLFNQVRSHEPSHVSEAEESHILV-GVRTIRPSGGC 99
           V C+  ++   N +T FN+ +  E +   ++E+ + LV   + I  S  C
Sbjct: 63  VDCMLKKVGFVNADTTFNEEKFRERTTKLDSEQVNRLVNNCKDITESNSC 112


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
 Frame = -3

Query: 422 YCTRIDQKRSFFRMSHNAIFAQVHVEHDFIA------GQYGNDHVDSINGCSNGVGWRHS 261
           YC    +  +F RM  N I  Q+  + +  A      GQ G   +D+I       GW H 
Sbjct: 314 YCAAT-KNPNFDRMQGNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHH 372

Query: 260 VLGRCVQCIFGR 225
           +    V C   R
Sbjct: 373 LARHAVACFLTR 384


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 545  SGHEGQGSVLSTHDS 501
            SGH G G +L+ +D+
Sbjct: 1929 SGHGGHGGLLTPYDT 1943


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,979
Number of Sequences: 438
Number of extensions: 4336
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)