Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b17r
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 30 0.35
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 29 0.47
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 28 1.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.5
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 2.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.5
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 27 2.5
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 27 3.3
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 4.4
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 4.4
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 4.4
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.8
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 26 5.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 5.8
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 5.8
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.8
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 5.8
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.9 bits (64), Expect = 0.35
Identities = 25/89 (28%), Positives = 34/89 (38%)
Frame = -2
Query: 553 APIIDDFVPIAVGPAIIDEFEPISVGPAIVNEFEPISVGPAIVDEFVPISVGPAIVDNPP 374
AP++ + + PA+ E +SV V P V P+ V PP
Sbjct: 550 APVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAP-EVPSVPQPPVAPVVPEAPSVPQPP 608
Query: 373 LAPVADSTPLVQIILNINQASSAPIVPGP 287
+APVA P V + AP VP P
Sbjct: 609 VAPVAPEVPSVPQRPAVPVVPEAPSVPQP 637
Score = 29.5 bits (63), Expect = 0.47
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Frame = -2
Query: 571 PGVAGP--APIIDDFVPIAVGPA--IIDEFEPISVGPAI--VNEFEPISVGPA--IVDEF 416
P V P AP++ + + P + E + PA+ V E + PA +V E
Sbjct: 587 PSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEV 646
Query: 415 VPISVGPAI--VDNPPLAPVADSTPLVQIILNINQASSAPIVPGPG 284
+ PA+ V P P + P+V + ++ Q + P+VP G
Sbjct: 647 PSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAG 692
Score = 26.6 bits (56), Expect = 3.3
Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 2/97 (2%)
Frame = -2
Query: 571 PGVAGPAPIIDDFVPIAVGPAIIDEFEPISVGPA--IVNEFEPISVGPAIVDEFVPISVG 398
P VA AP + V P ++ E + P + E + PA VP+
Sbjct: 577 PPVAPVAPEVPSVPQPPVAP-VVPEAPSVPQPPVAPVAPEVPSVPQRPA-----VPVVPE 630
Query: 397 PAIVDNPPLAPVADSTPLVQIILNINQASSAPIVPGP 287
V PP APV P V + AP VP P
Sbjct: 631 APSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQP 667
Score = 26.2 bits (55), Expect = 4.4
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Frame = -2
Query: 574 SPGVAGPAPIIDDFVPIAVGPAIIDEFEPISVGPAIVNEFEPISVGPAIVDE-FVPISVG 398
+P A P + + + PA+ F + A +P + P++ P+
Sbjct: 466 NPISAPEKPTSGESLSLNPPPAMPKVFPERDISSASQKAAQPSVITPSVPQPPAAPVVPE 525
Query: 397 PAIVDNPPLAPVADSTPLVQIILNINQASSAPIVP 293
V PP APVA P + Q +AP+VP
Sbjct: 526 APSVHQPPAAPVAPEVP------SAPQRPAAPVVP 554
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -2
Query: 475 PAIVNEFEPISVGPAIVDEFVPISVGPA--IVDNPPLAPVADSTPLVQIILNINQASSAP 302
P+++ P +V E + PA + P AP + P+V ++ Q + P
Sbjct: 507 PSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVP 566
Query: 301 IVP 293
+VP
Sbjct: 567 VVP 569
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 29.5 bits (63), Expect = 0.47
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 311 ASLVDVQNDLHERSAVSNGGKRRVVYDSGSN-GDRYELVDDGRPNGDRFE 457
A+ D+QN S+ G V Y SG+ GDR +DDG + FE
Sbjct: 90 AAYKDIQNTQKSLVTQSSTGSANVAYISGNGPGDR-SFIDDGNYSASSFE 138
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 399 PTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPATP 569
P+ +G+N + P GSN T A + + +S +G +SM P TP
Sbjct: 140 PSSLGSNHQFITTPPVNGSNEPTSAQTNHIITANSSPSGNAGSNASASMSVPPPLTP 196
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +3
Query: 339 CTRGVLSATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGP 518
CT TG LST PT T++S+ + P S S T + + + S+
Sbjct: 229 CTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS 288
Query: 519 TAI-GTKSSMMGAGPATP 569
T+I T +S P P
Sbjct: 289 TSIPPTGNSTTPVTPTVP 306
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +3
Query: 357 SATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTE---MGSNSSMMAGPTAI 527
S+T LST + P+ ++SST + + S+S + + + S+SS + PT+
Sbjct: 227 SSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTST 286
Query: 528 GTKSSMMGAGPATPGLT 578
+ S + ++P T
Sbjct: 287 SSTISSSSSSSSSPTST 303
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 384 STIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPA 563
S+ + PT + SST++ + S+ + + M S+SS + PT+ + S + P+
Sbjct: 295 SSSSSPT---STSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPS 351
Query: 564 T 566
+
Sbjct: 352 S 352
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.1 bits (57), Expect = 2.5
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +2
Query: 158 SNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDVQND 337
S+ SN S + + DGA+ +G+ +DF V+ + +N D +G+N V ++ D
Sbjct: 342 SHSSNAS--ENIVDGAVTQANGIESDFTRVDHEPIIVNN--DDENGNNESENEEV-IEED 396
Query: 338 LHERSAVSNGGKRRVVYDSGSN 403
R+ ++ + +VV D N
Sbjct: 397 NLNRNVIAE-AQNQVVADEERN 417
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 357 SATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPT--EMGSNSSMMAGPTAIG 530
S++ A L++ + TNS+T A PT S+SLT + T + S+S+ + +
Sbjct: 77 SSSAASSSLTSSSSLASSSTNSTTSASPT---SSSLTSSSATSSSLASSSTTSSSLASSS 133
Query: 531 TKSSMMGAGPAT 566
SS + + T
Sbjct: 134 ITSSSLASSSIT 145
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = +2
Query: 515 SDSDRYKVVDDGSRSGNAGTHQALSRAGDSNGHHGSEGQEEFHSFSSS 658
++ Y +D S + G H ++ + E +EEFH F S+
Sbjct: 160 TEDPSYGHSEDSEVSDDTGDHGSVDELESEREGNSGEEEEEFHGFESN 207
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 436 PAIVDEFVPISVGPAIVDNPPLAPVADSTPLVQIILNINQASSAPI 299
PAI DE + +DNP + + L++ +++INQAS + +
Sbjct: 178 PAIFDELQRSLSEVSNMDNPSFSKGLHTLHLLECLVDINQASGSDL 223
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/77 (23%), Positives = 29/77 (37%)
Frame = +3
Query: 342 TRGVLSATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPT 521
T ++TG+ G G T +S+ + GS + P +GS ++ T
Sbjct: 162 TTPAAASTGSLFGKPAATGTTSNAPPASSTSTTPATGSGGFSFGKPASLGSTNNASTSTT 221
Query: 522 AIGTKSSMMGAGPATPG 572
A S A + PG
Sbjct: 222 ANSGFSFGKPATTSAPG 238
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 95 GLRKS-DSGCGNDGSRDDHWLGSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLR 268
G+R+ ++ CG R + GSN S N+SN+ DN++ ND N+N+
Sbjct: 490 GIRRHLEAMCGATVERKEG--GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNN 547
Query: 269 DNGID 283
N D
Sbjct: 548 TNTDD 552
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 95 GLRKS-DSGCGNDGSRDDHWLGSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLR 268
G+R+ ++ CG R + GSN S N+SN+ DN++ ND N+N+
Sbjct: 490 GIRRHLEAMCGATVERKEG--GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNN 547
Query: 269 DNGID 283
N D
Sbjct: 548 TNTDD 552
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 164 GSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRD 271
GSNV +++ GD + D N ++++ + DN GL D
Sbjct: 246 GSNVDDVEDSGDSSSDKN-SINHE---IRDNEGLED 277
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 5.8
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = -2
Query: 520 VGPAIIDEFEPISVGPAIVNEF--EPISVGPAIVDEFVPISVGPAIVDNPPLAPVADSTP 347
V P I+ EF P ++ E I+ +D + P I NP +A TP
Sbjct: 247 VCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTP 306
Query: 346 LVQIILNINQASSAPIVPG 290
L +++ N+ Q+S + G
Sbjct: 307 LPELVDNVVQSSPIDVRKG 325
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 446 DRFEFVDNGRSDGNGLELIYDGRSDSDRYKVVDDGSRSGNAGTHQALSRAGDSNG-HHGS 622
+R ++ S+ N + + +G+ + R D S N+ + A+SRAG SNG + G+
Sbjct: 1496 ERSSEANHRTSNDNKRDEVTEGKDKNKR----QDISGESNSRQNNAISRAGRSNGSNRGN 1551
Query: 623 EGQE 634
+ ++
Sbjct: 1552 DSRD 1555
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 326 VQNDLHERSAVSNGGKRRVVYDSGSN 403
+ N+L RS+ +GGK R+ DS +
Sbjct: 3 LSNELFHRSSKDHGGKSRICLDSSED 28
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 485 NGLELIYDGRSDSDRYKVVDDGSRSGNAGTHQALSRAG 598
+G E +DG + + D +R GN T++A + G
Sbjct: 220 SGREWFWDGENAESDSSLNGDNTRGGNISTNRAFNNMG 257
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 368 GKRRVVYDS--GSNGDRYELVDDGRPNGDRFEFVDNGRSDGNGL 493
GKR VV S G+NG Y V G P G F+ + G +G+
Sbjct: 413 GKRNVVIVSSAGNNGPAYTTV--GAPGGTTFDVISVGAYVTSGM 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,073
Number of Sequences: 5004
Number of extensions: 40035
Number of successful extensions: 180
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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