Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b13f
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    30   1.0  
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p...    29   1.8  
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof...    29   2.4  
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta...    29   2.4  
At3g13410.1 68416.m01686 expressed protein                             29   2.4  
At4g01960.1 68417.m00261 expressed protein                             28   4.1  
At2g45680.1 68415.m05680 TCP family transcription factor, putati...    28   5.4  
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta...    28   5.4  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    28   5.4  
At5g15130.1 68418.m01773 WRKY family transcription factor contai...    27   7.2  
At1g36730.1 68414.m04569 eukaryotic translation initiation facto...    27   7.2  
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l...    27   7.2  
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co...    27   9.5  

>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 559 EIDLEVRFDIANSY--CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAEN 395
           E  +E   DI N    CS   +D+    EG+    L N+ L+ +S+GS+   D A N
Sbjct: 126 EDKVETNDDIKNEEAGCSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHN 182


>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
           protein (GI:507127) [Streptococcus pyogenes]
          Length = 509

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = -3

Query: 597 RKLLTAGP-TSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEA 421
           RK LTAG   SRPK   +R D++  +++      T  +  ++ EAV    T +      +
Sbjct: 130 RKTLTAGDIASRPKMETFR-DISDDMMVNEDKDETFDMHIQKVEAVLKDLTMTSEKSHSS 188

Query: 420 KDLRTRLKMRISPSAEPTDAETLGTARTKLS 328
             L       +  S++ TD + +   R+ LS
Sbjct: 189 DSLAKNTSANVDFSSQKTD-DPVTDVRSDLS 218


>At5g42870.1 68418.m05225 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 930

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 24/80 (30%), Positives = 32/80 (40%)
 Frame = -2

Query: 523 SYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNS 344
           S   S V D + +   D   S  +      +SG    Q   E   FSFS  D C   GNS
Sbjct: 353 SSTGSPVQDENKITIKDMHISAGDFEKSQSASGESILQPEIEEEQFSFSDLDECKPGGNS 412

Query: 343 QD*VESGADVADTTQMQGAE 284
                 G+  +DT ++ G E
Sbjct: 413 ----SVGSSSSDTVKVDGKE 428


>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
           domain-containing protein similarity to
           TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
           SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
           DnaJ domain, PF00515: TPR Domain
          Length = 1165

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 158 IGELLRAADPLRRDGYAGSWSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYVGT 325
           +GE +  +D L R    GS +  G     +F G V + K  DF+S      S+VGT
Sbjct: 218 VGEKI-LSDDLSRKLSVGSMTTDGNHSGDSFQGSVNEKKVHDFNSSCPMNYSFVGT 272


>At3g13410.1 68416.m01686 expressed protein
          Length = 321

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 583 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 452
           GWSNF   E  LE   D+A  +   ++  +DV  + +   +L N
Sbjct: 70  GWSNFLCSEKKLEQPVDVALVFIGRELLSSDVSSKRNSDPALVN 113


>At4g01960.1 68417.m00261 expressed protein
          Length = 236

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -2

Query: 568 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSS--GSERPQD 407
           + EE DL+V  +      + ++T N V  EGD S ++ N V  G+ S  GSE+  D
Sbjct: 6   SGEEEDLDVDIEDGRFNETQEITTNLVSAEGD-SENVLNHVWSGRLSFDGSEKSAD 60


>At2g45680.1 68415.m05680 TCP family transcription factor, putative
           similar to PCF2 (GI:2580440) [Oryza sativa]
          Length = 356

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 25/110 (22%), Positives = 46/110 (41%)
 Frame = -3

Query: 579 GPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRL 400
           G  S  + + W L+   P +IAA  + T+   A          T + A     ++L  + 
Sbjct: 107 GHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMSVNGTLKIPTTTNADSDMGENLMKKK 166

Query: 399 KMRISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPE 250
           + R S ++E  D     +A + L+ + T  T +  + L SS +     P+
Sbjct: 167 RKRPS-NSEYIDISDAVSASSGLAPIATTTTIQPPQALASSTVAQQLLPQ 215


>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
           putative / U6 snRNA-associated Sm-like protein, putative
           / Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
           snRNA-associated Sm-like protein LSm6 [Mus musculus]
          Length = 91

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 589 VDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 452
           +DG+ N A E+ +  V   + N+Y  + V  N+V+      G+LS+
Sbjct: 44  LDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSD 89


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 517  CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 398
            CSS  ++  VV EG+G   ++ ++ + KS+  E   D+ E
Sbjct: 990  CSSHPSNRLVVMEGNGLEIIAENLQRNKSNTQENSSDSEE 1029


>At5g15130.1 68418.m01773 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain; TMV
           response-related gene product, Nicotiana tabacum,
           EMBL:AB024510
          Length = 548

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -2

Query: 541 RFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFS 383
           R  I+N+   ++ T+N+  C G  S  L ++++    +G+   Q +++   FS
Sbjct: 475 RHSISNNIQQTNTTNNNKGCGGYFSSLLMSNIMASNQTGASLDQPSSQLPPFS 527


>At1g36730.1 68414.m04569 eukaryotic translation initiation factor
           5, putative / eIF-5, putative similar to SP|P55876
           Eukaryotic translation initiation factor 5 (eIF-5) {Zea
           mays}; contains Pfam profiles PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
           IF2B/IF5
          Length = 439

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -2

Query: 568 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 389
           AS E   EV   I   Y   D+ D DV+ E    G  S+ VLK  +   E  Q+A   ++
Sbjct: 379 ASAEAAKEVALVIKGLY-DEDILDEDVIVEWYNKGVKSSPVLKNVTPFIEWLQNAESESE 437


>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
           similarity to dienelactone hydrolase [Rhodococcus
           opacus] GI:23094407; contains Pfam profile PF01738:
           Dienelactone hydrolase family
          Length = 310

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 254 GRVTDVKADDFSSLHLRRVSYVGTRLNLVLA 346
           GRV DV A D S      VS+ GTR++  +A
Sbjct: 205 GRVVDVLATDESGYFSTGVSFYGTRIDSAVA 235


>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 587

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 92  DVDFEPNSQRILDIVISNLFNEIGEL 169
           D D+E + QR +D+++    N +G+L
Sbjct: 249 DKDYEDSKQREIDVLVKKTMNVLGDL 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,534,484
Number of Sequences: 28952
Number of extensions: 217172
Number of successful extensions: 671
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)