Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b12r
         (570 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   3.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.4  
AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    21   9.8  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   9.8  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   9.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 413  NQEKVFTTWPTHIKLKQRRSGLK--AQSWR 330
            N+E+    WP   K ++++ G K    SW+
Sbjct: 1138 NKERKICDWPKSAKCEEKKPGHKPSTSSWQ 1167


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 501 GNNDFHNYTLEWRPDGITXLVD 436
           G N+F+N    W P  I  ++D
Sbjct: 869 GFNEFYNQRRRWVPSTIANIMD 890



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 471 LGCSCGNRYSHDSYPMVFF 527
           LG +CG  +   S PMV++
Sbjct: 758 LGAACGRIHPVGSGPMVWY 776


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 501 GNNDFHNYTLEWRPDGITXLVD 436
           G N+F+N    W P  I  ++D
Sbjct: 869 GFNEFYNQRRRWVPSTIANIMD 890



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 471 LGCSCGNRYSHDSYPMVFF 527
           LG +CG  +   S PMV++
Sbjct: 758 LGAACGRIHPVGSGPMVWY 776


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 501 GNNDFHNYTLEWRPDGITXLVD 436
           G N+F+N    W P  I  ++D
Sbjct: 869 GFNEFYNQRRRWVPSTIANIMD 890



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 471 LGCSCGNRYSHDSYPMVFF 527
           LG +CG  +   S PMV++
Sbjct: 758 LGAACGRIHPVGSGPMVWY 776


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 501 GNNDFHNYTLEWRPDGITXLVD 436
           G N+F+N    W P  I  ++D
Sbjct: 869 GFNEFYNQRRRWVPSTIANIMD 890



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 471 LGCSCGNRYSHDSYPMVFF 527
           LG +CG  +   S PMV++
Sbjct: 758 LGAACGRIHPVGSGPMVWY 776


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 501 GNNDFHNYTLEWRPDGITXLVD 436
           G N+F+N    W P  +  ++D
Sbjct: 609 GFNEFYNQRRRWMPSTMANILD 630


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 501 GNNDFHNYTLEWRPDGITXLVD 436
           G N+F+N    W P  +  ++D
Sbjct: 842 GFNEFYNQRRRWMPSTMANILD 863


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 501 GNNDFHNYTLEWRPDGITXLVD 436
           G N+F+N    W P  +  ++D
Sbjct: 842 GFNEFYNQRRRWMPSTMANILD 863


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 287 LESESSPKTSPISLGK 240
           ++ E+SP  SP+++GK
Sbjct: 334 IKREASPYASPMTVGK 349


>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 139 FCDMRCYIREHXG 101
           F D RCY+R   G
Sbjct: 60  FMDFRCYLRPASG 72


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 139 FCDMRCYIREHXG 101
           F D RCY+R   G
Sbjct: 120 FMDFRCYLRPASG 132


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 139 FCDMRCYIREHXG 101
           F D RCY+R   G
Sbjct: 120 FMDFRCYLRPASG 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,545
Number of Sequences: 336
Number of extensions: 2700
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)