Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b12r
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0869 + 8487518-8487697,8487792-8488127,8488211-8488410,848... 33 0.21
04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122 33 0.21
04_04_1069 - 30554565-30555021,30556833-30557026,30557182-30557496 32 0.28
07_03_0376 + 17437308-17437536,17438049-17438149,17438246-174384... 32 0.37
03_01_0056 - 471338-471919,472013-472213 31 0.85
06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711 30 1.1
04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846 30 1.1
06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597 30 1.5
04_04_1064 - 30516378-30516735,30516852-30517051,30517148-30517411 29 2.0
11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910 29 3.4
04_04_0689 - 27292271-27292709,27293717-27293856,27294572-272946... 29 3.4
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 28 6.0
10_08_0818 + 20801061-20801298,20801409-20801509,20801600-208018... 28 6.0
02_05_1275 - 35395228-35395642,35396682-35397250 28 6.0
06_03_1254 - 28773066-28773489,28773580-28773773,28773849-28774103 27 8.0
03_05_0694 + 26844075-26844217,26844417-26844489,26844577-268447... 27 8.0
03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94... 27 8.0
>08_01_0869 +
8487518-8487697,8487792-8488127,8488211-8488410,
8488586-8488973
Length = 367
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIK 412
DFH YT+ W P I LVDG ++K
Sbjct: 225 DFHTYTIIWNPQMILILVDGTPIRQMK 251
>04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122
Length = 294
Score = 32.7 bits (71), Expect = 0.21
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIKPGE 403
D+H Y++ W P I LVDG++ + K E
Sbjct: 153 DYHTYSIVWNPKRILILVDGKAIRDFKNNE 182
>04_04_1069 - 30554565-30555021,30556833-30557026,30557182-30557496
Length = 321
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIKPGE 403
DFHNYT+ W P I VDG++ K E
Sbjct: 156 DFHNYTILWNPLNIIFSVDGKAVRVFKNHE 185
>07_03_0376 +
17437308-17437536,17438049-17438149,17438246-17438463,
17438544-17438901
Length = 301
Score = 31.9 bits (69), Expect = 0.37
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 492 DFHNYTLEWRPDGITXLVD 436
DFH+Y + W PD IT VD
Sbjct: 169 DFHHYAILWNPDAITFFVD 187
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 30.7 bits (66), Expect = 0.85
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 492 DFHNYTLEWRPDGITXLVD 436
DFH+Y + W PD I LVD
Sbjct: 126 DFHHYAILWNPDHIVFLVD 144
>06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711
Length = 288
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIKPGEGFYNVA 385
DFH Y++ W P I VDG E + E VA
Sbjct: 147 DFHTYSVLWNPSHILFYVDGTPIREYRNTEATTGVA 182
>04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846
Length = 293
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIK 412
DFH Y++ W PD I LVD + K
Sbjct: 149 DFHTYSVIWNPDEILILVDNMPIRQFK 175
>06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597
Length = 299
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIKPGEGF 397
DFH Y++ W P I +DG K E +
Sbjct: 151 DFHTYSILWNPHNIILYIDGTPIRVFKNNEAY 182
>04_04_1064 - 30516378-30516735,30516852-30517051,30517148-30517411
Length = 273
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIK 412
DFH Y++ W I LVDG E+K
Sbjct: 141 DFHTYSIVWTSQHILVLVDGTPIREMK 167
>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
Length = 1155
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -1
Query: 474 LEWRPDGITXLVDGESYGEIKPGEGFYNV-ANSYKVEAAPQWLKGTIMAPF 325
LEW D + + D E GEI P + Y P WL G +AP+
Sbjct: 787 LEWAKDAVRFVEDIELLGEIIPPTNLMEFEIHGYNCTKFPAWLMG--IAPY 835
>04_04_0689 -
27292271-27292709,27293717-27293856,27294572-27294664,
27295614-27296012,27296258-27296392,27296482-27296835
Length = 519
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIKPGEGFYN 391
D + T+ W P G+T VD + G + G G+Y+
Sbjct: 449 DMQDVTMLWLPGGVTAYVDVDKDGILCIGVGWYS 482
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 27.9 bits (59), Expect = 6.0
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Frame = -1
Query: 459 DGITXLVDGESYGEIKPGEGF-YNVANSYKVEAAPQWLKGTIMAPFDELXYVSIGLNVAG 283
DG ++D + + + G+G +V + + + + + GT MA + L I +
Sbjct: 405 DGAGMVIDEQDHSD-NGGDGSDMDVVSHFTEKFDEETIGGTEMADDENLTKEQIEAEIKK 463
Query: 282 IRE-------FSEDISNKPWKNSATKAMLKXWDARSQWFPTWDEDSALQVDYVKVFA 133
I+E F +++ P A + K +S +WD +L DY ++FA
Sbjct: 464 IKEANAEDEEFPDEVET-PLDVPAKRRFAKYRGLKSFRTSSWDPKESLPQDYARIFA 519
>10_08_0818 +
20801061-20801298,20801409-20801509,20801600-20801817,
20802461-20802824
Length = 306
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 489 FHNYTLEWRPDGITXLVD 436
FH+Y + W PD I LVD
Sbjct: 173 FHHYAILWNPDQILFLVD 190
>02_05_1275 - 35395228-35395642,35396682-35397250
Length = 327
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -1
Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIKPGEGFYNVANSYKVEAAPQWLKGTI 337
DFH+Y + W D I LVD G + + A P W+ G+I
Sbjct: 176 DFHHYAILWTSDHIIFLVDDVPIRRY----GRRSAGGAAGFPARPMWVYGSI 223
>06_03_1254 - 28773066-28773489,28773580-28773773,28773849-28774103
Length = 290
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIKPGEG 400
DFH Y++ W P I +VD + + EG
Sbjct: 136 DFHTYSILWNPKHIIFMVDDMPIRDFRNLEG 166
>03_05_0694 +
26844075-26844217,26844417-26844489,26844577-26844781,
26845516-26845655,26846858-26846983,26847455-26847622,
26848486-26848650,26849433-26849594,26849682-26849761,
26849975-26850038
Length = 441
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -1
Query: 504 HGNNDFHNYTLEWRPDGITXLVDGESYGEIKPGEGFYNVANSYKVEAAPQWLKG 343
HG + F+ +E P T L S ++ E ++ Y +++ P+WLKG
Sbjct: 332 HGASIFYTEAIELDPTDAT-LYSNRSLCHLQMTEALFDA--DYCIKSRPEWLKG 382
>03_01_0121 +
940338-940637,941023-941324,941417-941969,943889-944848
Length = 704
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 498 NNDFHNYTLEWRPDGITXLVDGE 430
++ FH+Y + W D I +DGE
Sbjct: 532 SDGFHHYAIAWGADAIEWRIDGE 554
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,798,078
Number of Sequences: 37544
Number of extensions: 293577
Number of successful extensions: 806
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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