Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b12r
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_56214| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.7  
SB_15524| Best HMM Match : GDA1_CD39 (HMM E-Value=2.6e-05)             28   6.2  

>SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1881

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = -2

Query: 356 SGLKAQ-SWRLLMNCXMCRSVLMWLESESSPKTSPISLGKTLPLKQCSNXGTPVVS-GSL 183
           S L+++ SWRLL +    RSV  W+ + +S  T PI+  K  PL   ++  TP  S  S 
Sbjct: 609 SSLRSRASWRLLSDISWTRSVFTWMTASTS-VTDPIASLK--PLSFATSCRTPPSSLNSC 665

Query: 182 RGM 174
           RG+
Sbjct: 666 RGL 668


>SB_56214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -2

Query: 284 ESESSPKTSPISLGKTLPLKQCSNXGTPVVSGSLRGMKIALFRW 153
           E   SPK  P  L KTLP  Q +   T ++  SL G  + L RW
Sbjct: 478 EIMGSPKMLPQFLAKTLP-TQSTFFITFIILKSLTGFSLELLRW 520


>SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -1

Query: 381 SYKVEAAPQWLKGTIMAPFDELXY----VSIGLNVAGIREFSEDISNKPWKNSATKAMLK 214
           SY V  + QW+ G+ +APF    Y    V  G+N++G  +  +  SN P    A      
Sbjct: 121 SYNVAISGQWITGSAVAPFYLSRYRANGVLSGINMSG--DLKDPSSNIPAGTLAALGFRY 178

Query: 213 XWDA 202
            W A
Sbjct: 179 PWSA 182


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -1

Query: 246  WKNSATKAMLKXWDARSQWFPT--WD 175
            WK  +T+     WDA  QW  T  WD
Sbjct: 1899 WKGDSTRRETGQWDATGQWVSTGQWD 1924


>SB_15524| Best HMM Match : GDA1_CD39 (HMM E-Value=2.6e-05)
          Length = 405

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
 Frame = -2

Query: 233 PLKQCSNXGT-----PVVSGSLRGMK---IALFRWTMLKFLRYEMLHQ 114
           PLKQ  +  T     P  S S+  +K   +ALF+W+ L FLR   LH+
Sbjct: 115 PLKQFLDDPTQHPFLPTFSQSITVIKCEILALFQWSTLNFLRGAFLHE 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,073,220
Number of Sequences: 59808
Number of extensions: 347118
Number of successful extensions: 756
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)