Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b12r
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99283-4|CAB16534.1|  342|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z99283-5|CAE46680.1|  308|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U80440-4|AAK21471.1|  186|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z99283-4|CAB16534.1|  342|Caenorhabditis elegans Hypothetical
           protein Y70C5C.6a protein.
          Length = 342

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
 Frame = -2

Query: 362 RRSGLKAQSWRLLMNCXMCRS--VLMWLESESSPKTSPIS----LGKTLPLK-QCSNXGT 204
           ++ GLK        N   CRS  +    E+  +P+   ++    L +T+ L+  CS+  T
Sbjct: 33  KKLGLKCTCKTRQSNAHPCRSCRIRKCYEAGMTPEKIQLTRDKHLNRTIKLEGPCSSLDT 92

Query: 203 PVVSGSLRGMKIALFRWTMLKFLRYEM 123
           P+ S     +   L  W  LK  R EM
Sbjct: 93  PITSRQTPNLYCVLSNWHELKMTREEM 119


>Z99283-5|CAE46680.1|  308|Caenorhabditis elegans Hypothetical
           protein Y70C5C.6b protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 248 LGKTLPLK-QCSNXGTPVVSGSLRGMKIALFRWTMLKFLRYEM 123
           L +T+ L+  CS+  TP+ S     +   L  W  LK  R EM
Sbjct: 43  LNRTIKLEGPCSSLDTPITSRQTPNLYCVLSNWHELKMTREEM 85


>Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical
           protein K05C4.5 protein.
          Length = 656

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 302 SVLMWLESESSPKTSPISLGKTLPLKQCSNXGTPVVSGSLRGMKIA 165
           SVL + +  +    S ISLG    L   S+ GT V  GS+ G+ IA
Sbjct: 99  SVLYFFDVSTKMIISSISLGVESRLFDVSSNGTIVAIGSIDGVIIA 144


>U80440-4|AAK21471.1|  186|Caenorhabditis elegans Hypothetical
           protein T21E12.5 protein.
          Length = 186

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 326 LMNCXMCRSVLMWLESESSPKTSPI 252
           LM C     VL+WLE+ +  KT+PI
Sbjct: 46  LMICVSACCVLLWLEAITIAKTTPI 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,496,400
Number of Sequences: 27780
Number of extensions: 248664
Number of successful extensions: 512
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)