Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b12r
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28850.1 68417.m04123 xyloglucan:xyloglucosyl transferase, pu...    33   0.10 
At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase / x...    32   0.23 
At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase, pu...    31   0.54 
At5g57540.1 68418.m07189 xyloglucan:xyloglucosyl transferase, pu...    31   0.72 
At5g57530.1 68418.m07188 xyloglucan:xyloglucosyl transferase, pu...    31   0.72 
At4g25810.1 68417.m03713 xyloglucan:xyloglucosyl transferase, pu...    30   0.95 
At5g57560.1 68418.m07191 xyloglucan:xyloglucosyl transferase / x...    30   1.2  
At5g48070.1 68418.m05939 xyloglucan:xyloglucosyl transferase, pu...    29   2.2  
At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferase, pu...    29   2.9  
At3g44990.1 68416.m04847 xyloglucan:xyloglucosyl transferase, pu...    29   2.9  
At4g14130.1 68417.m02180 xyloglucan:xyloglucosyl transferase, pu...    28   3.8  
At3g23730.1 68416.m02984 xyloglucan:xyloglucosyl transferase, pu...    28   3.8  
At5g42360.1 68418.m05158 kelch repeat-containing F-box family pr...    28   5.0  
At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase, pu...    28   5.0  
At5g57550.1 68418.m07190 xyloglucan:xyloglucosyl transferase / x...    27   6.7  

>At4g28850.1 68417.m04123 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative contains
           similarity to xyloglucan endotransglycosylase XET2
           GI:8886867 from [Asparagus officinalis]
          Length = 292

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 495 NDFHNYTLEWRPDGITXLVDG 433
           N FHNYT+ W P  +   VDG
Sbjct: 141 NGFHNYTIHWNPSEVVWFVDG 161


>At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase /
           xyloglucan endotransglycosylase / endo-xyloglucan
           transferase (XTR9) identical to xyloglucan
           endotransglycosylase GI:4218963 from [Arabidopsis
           thaliana]
          Length = 287

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 492 DFHNYTLEWRPDGITXLVDG 433
           DFH YT+ W P  I  LVDG
Sbjct: 145 DFHTYTVHWNPVNIIFLVDG 164


>At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase TCH4 GI:886116 from
           [Arabidopsis thaliana]
          Length = 305

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 489 FHNYTLEWRPDGITXLVDGESYGEIK 412
           FHNY++ W P  I   +DG+   E K
Sbjct: 144 FHNYSILWNPSHIVFYIDGKPIREFK 169


>At5g57540.1 68418.m07189 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase (XTR9) GI:4218963 from
           [Arabidopsis thaliana]
          Length = 284

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 492 DFHNYTLEWRPDGITXLVDG 433
           DFH YT+ W P  I  LVDG
Sbjct: 141 DFHTYTVLWNPLNIIFLVDG 160


>At5g57530.1 68418.m07188 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase XTR9 GI:4218963 from
           [Arabidopsis thaliana]
          Length = 285

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 492 DFHNYTLEWRPDGITXLVDG 433
           DFH YT+ W P  I  LVDG
Sbjct: 142 DFHTYTVLWNPLNIIFLVDG 161


>At4g25810.1 68417.m03713 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative (XTR6) identical
           to xyloglucan endotransglycosylase-related protein
           GI:1244758 from [Arabidopsis thaliana]
          Length = 286

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 495 NDFHNYTLEWRPDGITXLVDGESYGEIK 412
           +DFH Y++ W P  I   VDG    E K
Sbjct: 140 SDFHTYSILWNPQRIIFSVDGTPIREFK 167


>At5g57560.1 68418.m07191 xyloglucan:xyloglucosyl transferase /
           xyloglucan endotransglycosylase / endo-xyloglucan
           transferase (TCH4) identical to xyloglucan
           endotransglycosylase TCH4 protein GI:886116
          Length = 284

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIK 412
           +FH YT+ W P  I   VDG    E K
Sbjct: 138 NFHTYTILWNPQRIIFTVDGTPIREFK 164


>At5g48070.1 68418.m05939 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase TCH4 GI:886116 from
           [Arabidopsis thaliana]
          Length = 282

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIKPGE 403
           DFH Y + W P  +   +DG    E K  E
Sbjct: 145 DFHTYCIIWNPQRVIFTIDGIPIREFKNSE 174


>At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase TCH4 GI:886116 from
           [Arabidopsis thaliana]
          Length = 282

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIKPGE 403
           +FH Y + W P  I   VDG    E K  E
Sbjct: 145 NFHTYCITWNPQRIIFTVDGIPIREFKNSE 174


>At3g44990.1 68416.m04847 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative
          Length = 293

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -1

Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIKPGEGFYNVANSYKVEAAPQWLKGTI 337
           DFH+Y + W P+ I   VD             YN  N       P W+ G+I
Sbjct: 160 DFHHYAILWNPNQIVFFVDDVPIRT-------YNRKNEAIFPTRPMWVYGSI 204


>At4g14130.1 68417.m02180 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative (XTR7) almost
           identical to xyloglucan endotransglycosylase-related
           protein XTR7 GI:1244760 from [Arabidopsis thaliana], one
           amino acid difference
          Length = 289

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 492 DFHNYTLEWRPDGITXLVD 436
           +FH Y++ WRP  I  LVD
Sbjct: 143 NFHTYSIVWRPQHIIFLVD 161


>At3g23730.1 68416.m02984 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase-related protein
           GI:1244760 from [Arabidopsis thaliana]
          Length = 291

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 492 DFHNYTLEWRPDGITXLVD 436
           +FH Y+L WRP  I  +VD
Sbjct: 142 NFHTYSLVWRPQHIIFMVD 160


>At5g42360.1 68418.m05158 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 563

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 309 VSIGLNVAGIRE-FSEDISNKPWKNSA 232
           +S+G  VA   E F ED+SNK W +++
Sbjct: 59  ISVGCRVADTGEDFEEDLSNKRWSSAS 85


>At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase TCH4 GI:886116 from
           [Arabidopsis thaliana]
          Length = 282

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIKPGE 403
           +FH Y + W P  I   VDG    E K  E
Sbjct: 145 NFHTYCITWNPQRIIFTVDGIPIREFKNPE 174


>At5g57550.1 68418.m07190 xyloglucan:xyloglucosyl transferase /
           xyloglucan endotransglycosylase / endo-xyloglucan
           transferase (XTR3) identical to endoxyloglucan
           transferase GI:5533317 from [Arabidopsis thaliana]
          Length = 284

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 492 DFHNYTLEWRPDGITXLVDGESYGEIK 412
           DFH Y++ W P  I  +VD     E K
Sbjct: 145 DFHTYSVLWNPHHIVFMVDDIPVREFK 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,991,256
Number of Sequences: 28952
Number of extensions: 238176
Number of successful extensions: 626
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)