Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b12f
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0360 + 43056226-43057566                                         31   0.62 
01_01_0103 - 773727-774737,774797-774813,774852-775078,777465-77...    29   2.5  
05_01_0040 - 273384-273437,273920-274102,274465-274677,275479-27...    28   4.4  
12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665           27   7.6  
10_08_0348 + 17051521-17052092,17055173-17055998                       27   7.6  
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480...    27   7.6  
05_01_0092 - 609537-609941,610067-610328,610624-610731,611083-61...    27   7.6  
01_07_0214 - 42055848-42056155,42056263-42056442,42056560-420570...    27   7.6  

>01_07_0360 + 43056226-43057566
          Length = 446

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 127 RECTKHVCGSCYLKSCCATRHHRPRSKQYTLKDLGFPF-QMRASRYSRFTVNSTR 288
           +EC   +C +C L  CC   H +P  K   L     PF +   SR    T NS +
Sbjct: 330 KECGHQMCAACTLAICC---HSKPNPKTLLLHPPACPFCRTTISRLVVATTNSNK 381


>01_01_0103 -
           773727-774737,774797-774813,774852-775078,777465-778237
          Length = 675

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 154 THTHVLYILVTDVVFYLVR*V*LNTTCKMFTCEYVRNATYP 32
           T  +VL ++V D   ++VR       C+ F+C +++N +YP
Sbjct: 8   TVLYVLALVVADADHHVVRVQGRRHQCQPFSCGHLQNVSYP 48


>05_01_0040 -
           273384-273437,273920-274102,274465-274677,275479-276294,
           276431-276823,277233-277238
          Length = 554

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +3

Query: 240 PDEGFSLFAFHGKLNEEMEGLEAGHWSRDITKPKNGRWIFRDRNAALKVG 389
           PD+  +   F+G+ +E +E  +  ++  +IT P + +W F +R  +L  G
Sbjct: 115 PDQFTAFSNFNGQSSEHLETAKGANYMDEIT-PISRQWCFDNRGPSLPRG 163


>12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665
          Length = 366

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 75  HVVFNQTYRTK*NTTSVTRMYKTCVWVLLFKI 170
           H+  +  +R    TTSVT  Y+ CV+ +  ++
Sbjct: 257 HLRLDHPFRCPATTTSVTNRYRACVYAINLRV 288


>10_08_0348 + 17051521-17052092,17055173-17055998
          Length = 465

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 357 FRDRNAALKVGDKIYFWTFVIKDGLGYRQDNGEWTVEGFVDEAG 488
           + +    L+ GD++   TF    G G++ ++  WTVE  V +AG
Sbjct: 395 YMEAKRRLRPGDRVLMLTF----GAGFKCNSCVWTVEKPVSDAG 434


>06_03_0783 - 24546403-24546765,24547202-24547262,24547899-24548004,
            24548118-24551600,24553134-24553179
          Length = 1352

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +3

Query: 201  LEAIHPKGLRVSVPDEGFSLFAFHGKLNEEMEGLEAGHWSRDITKPKNGRWIFRDRNAAL 380
            L ++   GL VS+  E F LF  H  L E+ +  E   W +   +    +W     N  +
Sbjct: 1253 LRSLPWSGLLVSL--ETFILFGCHQALEEQFQRKEGPDWDKKRGRDPGAQWHSSQSNRIV 1310

Query: 381  KV 386
            ++
Sbjct: 1311 RI 1312


>05_01_0092 -
           609537-609941,610067-610328,610624-610731,611083-611204,
           611295-611366,611531-611590,611692-611874
          Length = 403

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +1

Query: 127 RECTKHVCGSCYLKSCCATRHHRPRSKQYTLKDLGFPFQMRASRYSRFTVNSTR 288
           ++C   +C  C L  CC   H++P     T      PF  R S  SR  V  TR
Sbjct: 289 QDCGHQMCAPCTLALCC---HNKPNPTTLTPPSPACPF-CRGS-ISRLVVAQTR 337


>01_07_0214 -
           42055848-42056155,42056263-42056442,42056560-42057077,
           42059507-42060063
          Length = 520

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 276 KLNEEMEGLEAGHWS-RDITKPKNGRWIFRDRNAALKVGDKIYFWTFVIKDGLGYRQDNG 452
           +LN E++G+  G W+  + + P +GR ++    A     D  + +  + +   G    +G
Sbjct: 52  RLNPEIDGVTGGEWNPTNASDPSSGR-VYFGEGAEYVDPDPGHSFQEIRQQIFGSDDASG 110

Query: 453 EWTVEGFVDEA 485
              ++GFV +A
Sbjct: 111 PARMDGFVQQA 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,320,615
Number of Sequences: 37544
Number of extensions: 364072
Number of successful extensions: 955
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)