Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b12f
         (554 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.48 
SB_5687| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.84 
SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0)                29   1.9  
SB_40454| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)                    29   3.4  
SB_35867| Best HMM Match : Fibrinogen_C (HMM E-Value=6.5e-13)          29   3.4  
SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_55183| Best HMM Match : SGS (HMM E-Value=1.6)                       28   5.9  
SB_6304| Best HMM Match : RVT_1 (HMM E-Value=3.2e-18)                  28   5.9  
SB_46731| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)                 28   5.9  
SB_31153| Best HMM Match : fn3 (HMM E-Value=1.4e-20)                   27   7.8  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    27   7.8  
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)            27   7.8  

>SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 333 KPKNGRWIFRDRNAALKVGDKIYFWTFVI-KDGLGYRQDNGE 455
           K K  +W   D NA  KVGD+ + +  V+ K GLG R DNGE
Sbjct: 25  KFKPHKWRLCDMNA--KVGDQNWDYERVMGKHGLGVRNDNGE 64


>SB_5687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 447 NGEWTVEGFVDEAGNPVNTEGSEITPGVEFTSTSLN 554
           +G   +   VD +GNPV+ E   +T GV+  S+ LN
Sbjct: 14  SGGTALISLVDGSGNPVSVEVQSVTDGVKILSSILN 49


>SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 939

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 39  VAFLTYSHVNILHVVFNQTYRTK*NTTSVTRMY-KTCVWVLLFKIVLCYEAPPATL 203
           + FL+ S + IL  +       + N T V +   +   ++LLF I +CY AP   L
Sbjct: 631 ITFLSISVIGILVTIVITVIFVRYNNTPVVKASNRELCYILLFCIAMCYVAPAVYL 686


>SB_40454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -1

Query: 482 FIYETFNCPLPVILSVS*AVLYDKSPKVNLISDFQRSISISEYPSSVFWLRDVPGPMA 309
           +I + +N     I  +   ++ DKS  V +I DF RS  ++E  + + +++ +  P A
Sbjct: 2   YIQDVYNVNREEISQLLPKLIQDKSATVEMIKDFCRSFKVAEEEALLHYVKTLLLPTA 59


>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
          Length = 1243

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 432 GYRQDNGEWTVEGFVDEAGNPVN 500
           G RQDN E +     ++AG PVN
Sbjct: 190 GLRQDNNEMSTSPIAEQAGGPVN 212


>SB_35867| Best HMM Match : Fibrinogen_C (HMM E-Value=6.5e-13)
          Length = 445

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 270 HGKLNEEMEGLEAGHWSRDITKPKNGRWIFRDRNAALKVGDKIYFWTFVIKDGLGYRQDN 449
           HG + E   G +  HW RD        W+ +D   A            VI++G+  R ++
Sbjct: 37  HGLVKEAETGAKVEHWKRDTGSSGIPAWM-KDTGKAYNGYPSQVTRNRVIREGIFSRLES 95

Query: 450 GEW 458
            EW
Sbjct: 96  MEW 98


>SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 333 KPKNGRWIFRDRNAALKVGDKIYFWTFVIKDGLGYRQDNGEWTVEG 470
           KPKN +W++ +      +G        +I   + Y+ D+G W+  G
Sbjct: 140 KPKNQKWVWYEHENPHNIGYDARVLNGMIDIAVTYKMDSGIWSPYG 185


>SB_55183| Best HMM Match : SGS (HMM E-Value=1.6)
          Length = 242

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 363 DRNAALKVGDKIYFWTFVI-KDGLGYRQDNGE 455
           D NA  KVGD+ + +  V+ K GLG R DNGE
Sbjct: 7   DMNA--KVGDQNWDYERVMGKHGLGVRNDNGE 36


>SB_6304| Best HMM Match : RVT_1 (HMM E-Value=3.2e-18)
          Length = 404

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 363 DRNAALKVGDKIYFWTFVI-KDGLGYRQDNGE 455
           D NA  KVGD+ + +  V+ K GLG R DNGE
Sbjct: 7   DMNA--KVGDQNWDYERVMGKHGLGVRNDNGE 36


>SB_46731| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
          Length = 519

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 363 DRNAALKVGDKIYFWTFVI-KDGLGYRQDNGE 455
           D NA  KVGD+ + +  V+ K GLG R DNGE
Sbjct: 55  DMNA--KVGDQNWDYERVMGKHGLGVRNDNGE 84


>SB_31153| Best HMM Match : fn3 (HMM E-Value=1.4e-20)
          Length = 407

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -3

Query: 519 LFQSPLCLLDYRLHLRNLQLSTPR---YPVCI 433
           +++ P+C+ +Y  + +   L TPR   YPVC+
Sbjct: 368 MYRYPVCMNEYYTYCQQYTLLTPRMYEYPVCM 399


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 247  RASRYSRFTVNSTRKWK 297
            R SRY RF VN  RKW+
Sbjct: 2388 RISRYYRFQVNVERKWR 2404


>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
          Length = 796

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -2

Query: 487 PASSTKPSTVHSPLSCLYPKPSFMTKVQK*ILSPTFSAAFRSLNIHLP 344
           PASSTK  T   P+S    +P   T + +  LS        SL  +LP
Sbjct: 380 PASSTKTETSSRPVSSKISEPLDKTLIMRNYLSQEDERFAESLRANLP 427


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,190,101
Number of Sequences: 59808
Number of extensions: 448083
Number of successful extensions: 1273
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)