Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b12f
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine rece...    33   0.18 
Z72509-1|CAA96645.1|  339|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U23484-4|AAC46768.2|  260|Caenorhabditis elegans Nudix family pr...    27   9.1  

>U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 32 protein.
          Length = 339

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 534 ILLLVLFQSPLCLLDYRLHLRNLQLSTPRYPVCIL 430
           +L L+ F+SP CL  Y + L N  ++   Y +C L
Sbjct: 28  LLFLIFFKSPSCLTPYTVFLANTSITQLGYCICFL 62


>Z72509-1|CAA96645.1|  339|Caenorhabditis elegans Hypothetical
           protein F32G8.1 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/35 (37%), Positives = 25/35 (71%)
 Frame = -3

Query: 534 ILLLVLFQSPLCLLDYRLHLRNLQLSTPRYPVCIL 430
           ++LLV+F++P+   D+R+ L N   ST ++ +CI+
Sbjct: 33  VVLLVVFKTPVVFKDFRVFLVN--SSTLQFFMCII 65


>U23484-4|AAC46768.2|  260|Caenorhabditis elegans Nudix family
           protein 6 protein.
          Length = 260

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 438 RQDNGEWTVEGFVDEAGNPVN 500
           R DNGEW + G + +AG  V+
Sbjct: 137 RHDNGEWAIPGGMVDAGEHVS 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,962,845
Number of Sequences: 27780
Number of extensions: 316839
Number of successful extensions: 958
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)