Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b12f
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   3.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   6.3  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 114 CSIWFGRFD*TQHVKCLRVNMLGTR 40
           CS+   RF+   +  CL+V+++ TR
Sbjct: 274 CSLCQRRFEEQGNYSCLKVDLIFTR 298


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 490 LPASSTKPSTVHSPL 446
           LP   T P+T HSPL
Sbjct: 440 LPERWTTPTTPHSPL 454


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 101 NQIEHNIRNENVQNMCV 151
           N IE+N  N+N++N  +
Sbjct: 25  NVIEYNFPNDNIRNTLI 41


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 402 FWTFVIKDGLGYRQDN 449
           F+T V+ D + YR DN
Sbjct: 248 FFTRVVTDTIKYRNDN 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,384
Number of Sequences: 438
Number of extensions: 3769
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)