Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b12f
         (554 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48195.1 68414.m05380 zinc finger (CCCH-type) family protein ...    35   0.032
At5g38490.1 68418.m04652 hypothetical protein contains Pfam prof...    30   0.90 
At5g52975.1 68418.m06577 expressed protein                             29   1.6  
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa...    29   2.8  
At5g13680.1 68418.m01593 IKI3 family protein weak similarity to ...    28   3.6  
At4g37250.1 68417.m05273 leucine-rich repeat family protein / pr...    28   3.6  
At2g04235.1 68415.m00411 expressed protein weak similarity to ne...    28   4.8  
At3g23810.1 68416.m02993 adenosylhomocysteinase, putative / S-ad...    27   6.4  
At3g01560.1 68416.m00086 proline-rich family protein contains pr...    27   6.4  
At4g34140.1 68417.m04845 D111/G-patch domain-containing protein ...    27   8.4  

>At1g48195.1 68414.m05380 zinc finger (CCCH-type) family protein
           contains Pfam profile PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type
          Length = 82

 Score = 35.1 bits (77), Expect = 0.032
 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
 Frame = +1

Query: 103 PNRTQHP*RECTKHV-CGSCYLKSCCATRHHR---PRSKQYTLKDLGFPF---QMRASRY 261
           P R   P  EC+ ++  G+CYLK  C   H +   P   Q TL D G P    Q     Y
Sbjct: 7   PERPGEP--ECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPHY 64

Query: 262 SRFTV 276
           SRF +
Sbjct: 65  SRFGI 69


>At5g38490.1 68418.m04652 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 364

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 303 EAGHWSRDITKPKNGRWIFRDRNAALKVGDKIYFWTFVIKDGLGYRQD 446
           ++GH + + T   N  W    ++++LKVGDKI  WTF  +  L +  D
Sbjct: 317 DSGHGTLNYTL--NWGWNDVVKSSSLKVGDKISLWTFRCRGVLCFALD 362


>At5g52975.1 68418.m06577 expressed protein
          Length = 121

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 120 SVTRMYKTCVWVLLFKIVLCYEAPPATLEAIHPKGLRVSVPDEGFSLFAFHGKLNEEMEG 299
           SV  +   CV + + + V   + PP T+  I P GL + +     SLF   G + E  + 
Sbjct: 8   SVILIVSLCVAIFVTQGVAHMQTPPTTVPGIFPPGLPIDLVKCWSSLFNVEGCVLEIAKS 67

Query: 300 LEAG 311
           + +G
Sbjct: 68  IFSG 71


>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 997

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -2

Query: 541 LVNSTPGVISEPSVFTGLPASSTKPSTVHSPLSCLYPKPSFMTKVQK*ILSPTFSAAFRS 362
           + NS P + S    F+  P + T P +  +P S     PSF          PT + +FRS
Sbjct: 403 VTNSQPSIFSTSPAFSQTPVNPTNPFSQTTPTSNTNFSPSFSQPTTPSFGQPT-TPSFRS 461


>At5g13680.1 68418.m01593 IKI3 family protein weak similarity to
           SP|O95163 IkappaB kinase complex-associated protein (IKK
           complex-associated protein) (p150) {Homo sapiens};
           contains Pfam profile PF04762: IKI3 family
          Length = 1319

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = -2

Query: 463 TVHSPLSCLYPKPSFMTKVQK*ILSPTFSAAFRSLNIHLPFFGFVMSLDQW 311
           T+   L C+YP+   ++ +   +    F  AF  +  H   F  ++ L  W
Sbjct: 696 TMRGNLECIYPRKLVLSSITNALAQQRFKDAFNLVRRHRIDFNVIVDLYGW 746


>At4g37250.1 68417.m05273 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 768

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 541 LVNSTPGVISEPSVFTGLPASSTKPSTVHS 452
           L+ S+P ++SE  V T  PA +  P+T+ S
Sbjct: 277 LIPSSPSIVSEADVPTSTPAIAAIPNTIGS 306


>At2g04235.1 68415.m00411 expressed protein weak similarity to
           neurofilament protein (GI:161292) [Loligo pealei]; weak
           similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
           (Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
           glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
           cerevisiae]
          Length = 1226

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 180 YEAPPATLEAIHPKGLRVSVPDEGFSLFAFHGKLNE 287
           YE PP T  A    G   S PDE   +  F G+L++
Sbjct: 52  YETPPNTSAAKPQNGGDTSEPDEDNKVIRFFGELSD 87


>At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /
           S-adenosyl-L-homocysteine hydrolase, putative /
           AdoHcyase, putative strong similarity to
           SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1)
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
           {Nicotiana sylvestris}; contains Pfam profile PF00670:
           S-adenosyl-L-homocysteine hydrolase, NAD binding domain
          Length = 485

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 288 EMEGLEAGHWSRDIT-KPKNGRWIFRDRNAALKV 386
           +M GLE     + IT KP+  RW+F D N+ + V
Sbjct: 356 DMLGLETYPGVKRITIKPQTDRWVFPDTNSGIIV 389


>At3g01560.1 68416.m00086 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 511

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 523 GVISEPSVFTGLPASSTKPSTVHS 452
           G +SEP  ++G P SS KP  + S
Sbjct: 392 GYLSEPYTYSGSPMSSAKPPHISS 415


>At4g34140.1 68417.m04845 D111/G-patch domain-containing protein
           contains Pfam PF01585: G-patch domain
          Length = 418

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 405 WTFVIKDGLGYRQDNGEWTVEGFVDEAGNP 494
           W +  KDG  Y+ +NGE+    + + + NP
Sbjct: 48  WYYCSKDGRYYKHENGEYVPLEYDESSVNP 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,135,093
Number of Sequences: 28952
Number of extensions: 293808
Number of successful extensions: 743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)