Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b10r
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    29   0.85 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   2.6  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    27   3.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.5  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.0  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 198 HTFLSNMDNPLFFLSVATLKSPN*VPLN 281
           HTF ++++   FFL++  L   N VPLN
Sbjct: 138 HTFTNSIETIFFFLTILFLSKLNSVPLN 165


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 659  KSLLHIPLSKFLLSSSVLNIKLKWAGEKN*KALNS 555
            KSL H+PLS+ +L ++V  +   +  +K  K + S
Sbjct: 1234 KSLRHLPLSQRILDANVTRLPSNFTDDKKQKIMKS 1268


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 141 ICRKISNKLYTRYNMILRLHTFLSNMDNPLFFLSVATLK 257
           +C K +N    +  MIL  ++F +++ +P  F+  ATL+
Sbjct: 78  VCPKYNNDGTMKQEMILACNSFRNDLQHPNEFIRGATLR 116


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 574 FFSPAHFNFIFNTLLLNKNFDKGMCNNDF 660
           F SP H+ F   T+ ++K  D    NNDF
Sbjct: 56  FPSPEHWRFPIYTIAIDKWVDGDPTNNDF 84


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 599 LYLIHCCLTKISIKECVIMILLHPS 673
           L+ +  C+T  S++  +++IL+HPS
Sbjct: 558 LHDVPTCITSFSLERKLLVILVHPS 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,711
Number of Sequences: 5004
Number of extensions: 49608
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)