Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b10r
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 611 VLNIKLKWAGEKN*KALNSARVFF*CFPKN*QTKFTV 501
           ++ IK  WAGEKN + LN A VF   + K  +  F +
Sbjct: 122 IVFIKDGWAGEKNAQQLNEAHVFVEVWGKGPEPNFDI 158


>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 671 RDVTKSLLHIPLSKFLLSSSVLNIKLKWAGE 579
           RD+ +S+LH+P   F +++S   I  +W+ +
Sbjct: 317 RDIVQSILHVPKYDFYITASQKGIICQWSNK 347


>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 249 LQLKGKITDCPYLTKMCVSVGSYCILCITCY*FSCK 142
           ++L+  +  C Y+  +CVS  S C+  + C   +C+
Sbjct: 220 VRLRCTVCACRYVHSVCVSFRSQCVRVVMCTVCACR 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,503,417
Number of Sequences: 59808
Number of extensions: 339335
Number of successful extensions: 452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)