Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b10r
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ...    29   2.3  
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ...    29   2.3  

>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
           subunit ClpX, putative similar to CLP protease
           regulatory subunit CLPX GI:2674203 from [Arabidopsis
           thaliana]; non-consensus splice donor GC at exon 4;
           non-consensus splice donor AA at exon 7
          Length = 606

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 126 FCTLVICRKISNKLYTRYNMILRLHTFLSNMDNP 227
           FC+L I R +S K  T  +++ R   FL ++D+P
Sbjct: 2   FCSLSISRFVSRKTITSSSLLSRSFRFLLSVDSP 35


>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
           similar to root phototropism RPT2 [Arabidopsis thaliana]
           gi|6959488|gb|AAF33112, a signal transducer of
           phototropic response PMID:10662859
          Length = 526

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 129 CTLVICRKISNKLYTRYNMILRLHTFLSNMDNPLFFLSVATLKSP 263
           C+L+ C+K+S  +Y       R    LSN D+P    +  TL  P
Sbjct: 383 CSLMDCKKLSRDVYAHAAQNDRFQENLSNSDSPAPATAEKTLSPP 427


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,038,250
Number of Sequences: 28952
Number of extensions: 232343
Number of successful extensions: 407
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)