Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b10f
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    96   4e-21
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    33   0.025
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    29   0.53 
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    28   0.93 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.1  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    27   2.8  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   3.7  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    26   3.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.9  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    25   6.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.6  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    25   8.6  

>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 95.9 bits (228), Expect = 4e-21
 Identities = 56/143 (39%), Positives = 85/143 (59%), Gaps = 8/143 (5%)
 Frame = +1

Query: 205 VFVST-FVILYKFYYKYKTHCSKVAPLK-KLPKLRKDMTAVELRQYDGTQEGGRVLMAVN 378
           VF+ T F+ L    ++ K   S +A  + K P+ R D T  EL++Y+G++    V +A+ 
Sbjct: 7   VFIVTLFLYLLITRWRRKNEKSFIASEEPKQPEWR-DYTPAELKEYNGSKNS-LVFLAIK 64

Query: 379 GWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSVT---APEKD---YDDLSDLNSMEM 540
           G +++VT G++FYGP GPY+ F G DA+RGLA  S      P+ D    DD SDLN  E 
Sbjct: 65  GTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNSFDDEFIPDSDAEELDDCSDLNDEER 124

Query: 541 ESVREWEEQFRENYDLVGRLLRP 609
           +++ +W+  F + Y  VGRL+ P
Sbjct: 125 QALNDWKAFFDQKYQAVGRLISP 147


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 33.5 bits (73), Expect = 0.025
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
 Frame = -3

Query: 475 WRVLLWHLFLQKQHMAHRDRRTDSL*SHRI-STHSQPSTLCHPPVSRRTAVVLLRSYLFA 299
           ++V+L    L++ H   RDR         + S+ SQ S  CH  ++R   + L   +  A
Sbjct: 142 FKVILDRYSLREAHAFVRDRTRAVRQDFSVQSSFSQDSVYCHELIARFHIISL---HELA 198

Query: 298 I*VVFSREQPLNNVSYTCSKIYTVSQMYSQKQNK*TVDKTVFLRSQKSHCVWLAHFQPLV 119
               FSR+Q +  +S +   +YT+ Q+Y             ++  +K HC   A F+  +
Sbjct: 199 HTPNFSRQQEIEQLSKSMEILYTLGQLYD------------YMHLRKEHCTHEAEFRAYM 246

Query: 118 V 116
           V
Sbjct: 247 V 247


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -2

Query: 290 SFFKGATFEQCVLYL**NLYSITNV 216
           +FF+ AT +QC+L    +L+S+TN+
Sbjct: 15  NFFRNATLDQCLLLFYLSLFSLTNL 39


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 163 ETLKTLFCQPFIYFVFVSTFVILYKFYYKYKTHCSKVAP-LKKLPKLRKDMTAVELRQYD 339
           E L  L    F   V   T  +L +FY  +  HC  +AP  +KL +   D + V + + D
Sbjct: 355 EDLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKID 414

Query: 340 GTQ 348
            T+
Sbjct: 415 ATE 417



 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 223 VILYKFYYKYKTHCSKVAPLKKLPKLRKDMTAVELRQYDGTQEG 354
           V++ KFY  +  HC  +AP  +      +   + L + D T+EG
Sbjct: 41  VLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEG 84


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -2

Query: 560 SHSLTDSISIELRSLKSS*SFSGAVTENVASPLVASLPPKTA-YGPPGP*NRFPLVTSN 387
           SHS T      + S  S+ +   AVT    +PL+ S+    A   PP    + P  TSN
Sbjct: 238 SHSFTSGTHPPIVSSNSAFTLPNAVTPAAQAPLIRSVSEYPANVSPPAQSLQLPKSTSN 296


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +1

Query: 112 DSPPEVENVQAKHSGFFET--LKTLFCQPFIYFV 207
           ++P +VEN+ +K   FF    L  L+ +P ++F+
Sbjct: 242 ENPRKVENIVSKQIAFFRKLYLPLLYAEPGVHFI 275


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = +1

Query: 427 GPYAVFGGRDATRGLATFS--VTAPEKDYDDLSDLNSMEMESVREWEEQFRENYDLVGRL 600
           G Y    GR   RGL      +     +  D + L  M M    +   QFR  Y+++  L
Sbjct: 679 GEYTQCSGRAGRRGLDVTGTVIILSRSELPDTASLRHMIMGPSSKLISQFRLTYNMILNL 738

Query: 601 LR 606
           LR
Sbjct: 739 LR 740


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 425 PGP*NRFPLVTSNIHPFTAINTLPPSCVPSYCRS 324
           P P    P+  +  H  T +NT P S V + CRS
Sbjct: 198 PSPIILKPVEQAVNHAITLVNTSPSSVVDALCRS 231


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
 Frame = -2

Query: 599 SRPTRS*FSLNCSSHSLTDSISIELRSLKSS*SFSGAVTENVASPLVASLPP---KTAYG 429
           S P  S   LN SS  +T S ++   +  +S S   + T   +S ++ S  P    TA  
Sbjct: 609 STPITSSSVLN-SSTPITSSTALNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTALN 667

Query: 428 PPGP*NRFPLVTSN--IHPFTAINTLPPSCVPSYCRSSTAVIS 306
              P     ++ S+  I   TA+NT  P    S   SSTA+ S
Sbjct: 668 TSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAITS 710



 Score = 25.0 bits (52), Expect = 8.6
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
 Frame = -2

Query: 599  SRPTRS*FSLNCSSHSLTDSISIELRSLKSS*SFSGAVTENVASPLVASLP--PKTAYGP 426
            S P  S   LN S+   + S+     ++ SS + + +     +S L +S P    T    
Sbjct: 993  STPITSSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTVVNT 1052

Query: 425  PGP*NRFPLVTSN--IHPFTAINTLPPSCVPSYCRSSTAVISFRNLGS 288
              P     +V S+  I   TA+NT  P    S   SST + S   L S
Sbjct: 1053 STPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNS 1100



 Score = 25.0 bits (52), Expect = 8.6
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
 Frame = -2

Query: 563  SSHSLTDSISIELRS-LKSS*SFSGAVTENVASPLVAS--LPPKTAYGPPGP*NRFPLVT 393
            SS +L  S  I   S L SS   + +   N ++P+ +S  L   T        N    +T
Sbjct: 1586 SSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPIT 1645

Query: 392  SNIHPFTAINTLPPSCVPSYCRSSTAVIS 306
            S+    TA+NT PP    +   SST + S
Sbjct: 1646 SS----TALNTSPPITSSTVVNSSTPITS 1670


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 196 IYFVFVSTFVILYKFYYKYKTHCSKVAPLKKLPKLR 303
           IYF+   + + L   Y+   T C +    KK+P+L+
Sbjct: 210 IYFLHSPSIIALGAIYHTNPTICLQYIEAKKIPELQ 245


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 145 WLAHFQPLVVNPFYSR*KNVCAGTLSFCFYSILNL 41
           W+  + P+++  FY   + V AG  SF   S+L +
Sbjct: 239 WMNIWCPIILYEFYGNDRQVQAGMSSFLIPSLLGV 273


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 466 GLATFSVTAPEKDYDDLSDLNSMEMESVREWEEQFRENYDLVG 594
           G A   V   E  YDD  D+++ E  +   ++++FR    L G
Sbjct: 27  GKAAEIVDTHENFYDDQGDIDNPEELAELGYKQEFRRQLSLFG 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,403
Number of Sequences: 5004
Number of extensions: 57038
Number of successful extensions: 218
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)