Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b10f
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)             146   1e-35
SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)               85   6e-17
SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)                75   6e-14
SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09
SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   8e-06
SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)                 29   3.0  
SB_2270| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_23584| Best HMM Match : RVT_1 (HMM E-Value=0.0029)                  29   3.0  
SB_14926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_6989| Best HMM Match : LRR_1 (HMM E-Value=0.074)                    28   5.2  
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 28   6.9  

>SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score =  146 bits (354), Expect = 1e-35
 Identities = 78/156 (50%), Positives = 99/156 (63%), Gaps = 2/156 (1%)
 Frame = +1

Query: 151 SGFFETLKTLFCQPFIYFVFVSTFVILYKFYYKYKTHCSKVAPLKKLPKLRKDMTAVELR 330
           S     L +L     I  + V  FVI      K+     +  P +  P  ++D T  EL+
Sbjct: 8   SSILNFLSSLSSPIQIVLLIVLVFVIRRILKAKFDKVPEEPPPKRLEPFKKRDFTLDELK 67

Query: 331 QYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSV--TAPEKD 504
           +YDG +    VLMAVNG +FDVTRG  FYGPGGPY+ F G DA+RGLATFS+   A + +
Sbjct: 68  EYDGLKSP-YVLMAVNGKVFDVTRGKDFYGPGGPYSNFAGHDASRGLATFSLGPEAIKDE 126

Query: 505 YDDLSDLNSMEMESVREWEEQFRENYDLVGRLLRPG 612
           YDDLSDLN M+ +S+REWE+QF E YDLVGRLL+PG
Sbjct: 127 YDDLSDLNGMQQDSLREWEQQFDEKYDLVGRLLKPG 162


>SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
 Frame = +1

Query: 304 KDMTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFS 483
           ++ T  EL+ YDG  +   + +AVNG +FDVT    ++GP GP  +  G+DA+R L TFS
Sbjct: 72  REFTVRELKGYDGVNKE-LIYVAVNGKVFDVTSAWNYFGPAGPDCLLAGKDASRALVTFS 130

Query: 484 V-----TAPEKDYDDLSDLNSMEMESVREWEEQFRENYDLVGRLL 603
           V     T      DDL+DLN ++ + + E+E Q+ E Y  VGRL+
Sbjct: 131 VDNFYQTEQRDSMDDLNDLNPLQRDCLFEYETQYMERYPCVGRLV 175


>SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)
          Length = 310

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 33/98 (33%), Positives = 60/98 (61%)
 Frame = +1

Query: 310 MTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSVT 489
           ++  +L ++DG+Q    + +A+ G ++DV +G RFYGPG  Y VF GRD+T    T  + 
Sbjct: 88  LSTEDLAKHDGSQPDANIYIAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVT-GMF 146

Query: 490 APEKDYDDLSDLNSMEMESVREWEEQFRENYDLVGRLL 603
              K  DD S+L + ++  ++ W E ++++Y  VG+++
Sbjct: 147 DRAKATDDCSNLKNEDLLGIKGWMEFYQKDYKYVGKVV 184


>SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 25/61 (40%), Positives = 39/61 (63%)
 Frame = +1

Query: 310 MTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSVT 489
           ++ V+L ++DG Q    + +A+ G ++DV +G RFYGPG  Y VF GRD+T    T  V+
Sbjct: 272 LSTVDLVKHDGLQPDANIYIAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVTVLVS 331

Query: 490 A 492
           +
Sbjct: 332 S 332


>SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
 Frame = +1

Query: 286 KLPKLRKDMTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATR 465
           K+    K  T  EL  ++G      + +AV G +FDV+     YG G  Y    G++ +R
Sbjct: 40  KITPGHKLFTKDELATFNGRNSNSPIYVAVKGVVFDVSTSKDLYGYGESYNSMAGKECSR 99

Query: 466 GLATFSVTAPEKDYDDLSDLNSMEMESV-REWEEQFRENYDLVG 594
            +A +S+ A E    +L  L   E++ + + + + +   Y +VG
Sbjct: 100 AIAKWSLAA-ENMNGNLDGLTKDELQRLEKNFHDVYMRKYPVVG 142


>SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)
          Length = 885

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = -3

Query: 412 TDSL*SHRISTHSQPSTLCHPPVSRRTAVVLLRSYLFAI*VVFSREQP 269
           T ++ +HR++ H+    L  PPVS +T +V +    +++    SR++P
Sbjct: 807 TTTITNHRLNCHTNSVILSSPPVSDQTPIVQVFGAQWSLMRANSRKRP 854


>SB_2270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 258 CLILVVKFIQYHKCTHKNKINKRLTKQCF*GLKKATVFGLHI-FNLWW*IH 109
           C I+ + F+QY  CT +       T +C   +K   + G+HI  +L W +H
Sbjct: 477 CKIMDIDFLQYRACTWRPIYVGGTTLEC---VKSFKLLGIHISSDLTWDVH 524


>SB_23584| Best HMM Match : RVT_1 (HMM E-Value=0.0029)
          Length = 511

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 258 CLILVVKFIQYHKCTHKNKINKRLTKQCF*GLKKATVFGLHI-FNLWW*IH 109
           C I+ + F+QY  CT +       T +C   +K   + G+HI  +L W +H
Sbjct: 407 CKIMDIDFLQYRACTWRPIYVGGTTLEC---VKSFKLLGIHISSDLTWDVH 454


>SB_14926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1638

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 358 CHPPVSRRTAVVLLRSYLFAI*VVFSREQPLNNVSYTCSKIYTVSQMYSQKQ 203
           C+PP S+ T+  +   +LF I   F ++Q L  +    +   + S M S KQ
Sbjct: 43  CNPPFSKNTSTNIGHRFLFLIDKHFPKDQKLRKIFNRNTIKISYSSMSSTKQ 94


>SB_6989| Best HMM Match : LRR_1 (HMM E-Value=0.074)
          Length = 180

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 356 PPSCVPSYCRSSTAVISFRNLGS 288
           PP CV  YC +S  VI+ R L +
Sbjct: 9   PPPCVGFYCEASPRVITIRTLNA 31


>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 226 ILYKFYYKYKTHCSKVAP--LKKLPKLRKDMTAVELRQYDGTQE 351
           +L +FY  +  HC  +AP   K   +L+ + + ++L + D T E
Sbjct: 44  VLVEFYAPWCGHCKALAPEYAKAAGQLKSEKSEIKLAKVDATAE 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,932,766
Number of Sequences: 59808
Number of extensions: 429501
Number of successful extensions: 1098
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)