Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b09r
(460 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 86 1e-17
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 86 1e-17
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 86 1e-17
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 82 2e-16
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 81 5e-16
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 81 5e-16
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 73 1e-13
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 69 1e-12
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 31 0.37
At1g67140.1 68414.m07638 expressed protein 30 0.86
At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containi... 29 2.0
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila... 27 6.1
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont... 27 6.1
At4g26540.1 68417.m03823 protein kinase family protein Three fal... 27 8.1
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 27 8.1
At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS cla... 27 8.1
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 85.8 bits (203), Expect = 1e-17
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = -1
Query: 382 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 203
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 202 KLSSMPVGGG 173
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 85.8 bits (203), Expect = 1e-17
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = -1
Query: 382 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 203
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 202 KLSSMPVGGG 173
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 85.8 bits (203), Expect = 1e-17
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = -1
Query: 382 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 203
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 202 KLSSMPVGGG 173
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 82.2 bits (194), Expect = 2e-16
Identities = 37/70 (52%), Positives = 53/70 (75%)
Frame = -1
Query: 382 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 203
M+ VAA+LLAVL GK +P D++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 202 KLSSMPVGGG 173
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 80.6 bits (190), Expect = 5e-16
Identities = 34/70 (48%), Positives = 54/70 (77%)
Frame = -1
Query: 382 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 203
M+ AA+LLAVLGG P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
Query: 202 KLSSMPVGGG 173
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 80.6 bits (190), Expect = 5e-16
Identities = 34/70 (48%), Positives = 54/70 (77%)
Frame = -1
Query: 382 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 203
M+ AA+LLAVLGG P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
Query: 202 KLSSMPVGGG 173
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 72.5 bits (170), Expect = 1e-13
Identities = 34/70 (48%), Positives = 48/70 (68%)
Frame = -1
Query: 382 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 203
M+ VAAYLLA L G P+ AD++KI+ SVG E D EK+ + + +DV +LIA GRE
Sbjct: 1 MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60
Query: 202 KLSSMPVGGG 173
K++++ GGG
Sbjct: 61 KMAALSSGGG 70
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 69.3 bits (162), Expect = 1e-12
Identities = 33/69 (47%), Positives = 47/69 (68%)
Frame = -1
Query: 382 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 203
M+ +AA+LLA LGG P + D++KIL SVG E D K+ + + + DV +LIAAGRE
Sbjct: 1 MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60
Query: 202 KLSSMPVGG 176
K+S++ GG
Sbjct: 61 KMSALSSGG 69
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 31.1 bits (67), Expect = 0.37
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = -1
Query: 313 EKILSSVGIEADAEKLKKVITELNGKDVE----QLIAAGREKLSSMP 185
E++L G+E +K+++TE NG+ +E +L+A+G+ L P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 29.9 bits (64), Expect = 0.86
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 197 QLLTSGRNKLFNILAVELSDYFLKLLSVSFDTDGAEDLLNVS 322
Q L++GR L+++L L++LS SF D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444
>At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containing
protein low similarity to CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 510
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 325 AADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLS 194
A+ VE +S+ DAE++ K++T+ VE L+ KLS
Sbjct: 50 ASSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLS 93
>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar to
DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
Length = 1280
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +2
Query: 248 LSDYFLKLLSVSFDTDGAEDLLNVSG---SWRGL 340
L+ YF ++ SF D +L NVSG W+GL
Sbjct: 1006 LTHYFTEITDYSFTADMETELDNVSGGVTEWKGL 1039
>At4g29880.1 68417.m04252 leucine-rich repeat family protein
contains leucine rich repeats, Pfam:PF00560
Length = 404
Score = 27.1 bits (57), Expect = 6.1
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +2
Query: 188 H*RQLLTSGRNKLFNILAVELSDYFLKLLSVSFDTDGAEDLLNVSGSWRGLATQHSQ*IR 367
H +++ S +L N++A+++ +K L S +LNVSG++ Q Q R
Sbjct: 87 HIKKIPESLTARLLNLIALDIHSNQIKALPNSIGCLSKLKILNVSGNFLVSLPQTIQNCR 146
Query: 368 GHVTHFLSPN 397
H + PN
Sbjct: 147 FHTSTKSGPN 156
>At4g26540.1 68417.m03823 protein kinase family protein Three false
introns were added with non-consensus splice sites to
circumenvent frameshifts likely due to sequencing
errors; this is extremely unusual and is under
investigation.
Length = 1089
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -3
Query: 455 LVDVCSRRTLFFRHYTFRVN*DLKNALRGRVFTGCAGWQ 339
L+ CS R L Y + N L + L G GC W+
Sbjct: 815 LLGWCSNRNLKLLFYDYLPNGSLSSRLHGAGKGGCVDWE 853
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 289 IEADAEKLKKVITELNGKDVEQL 221
IE D K+KKVI EL+ K E L
Sbjct: 1003 IETDKSKIKKVIEELDEKKKETL 1025
>At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 703
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 177 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASAS 287
PP+ + S S P+ +S STS P SS S S + +
Sbjct: 43 PPSSLASSTSPPSTLSSSTSHPSSSTSPPSSLSCTGT 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,136,996
Number of Sequences: 28952
Number of extensions: 104561
Number of successful extensions: 324
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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