Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b08r
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.44 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.44 
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    23   1.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.8  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   5.4  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 479 RPRCLKSNMFLGLDISPVSTS*SNFVIENCMES 577
           +P  +  N+ +GLDI+ ++   S+FV+   +E+
Sbjct: 207 KPCSINENLKMGLDIASITAQASSFVVWPLVEN 239



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 416  PNTATQRLPSVSMVVPSG 469
            PN  +Q  PSV +  P+G
Sbjct: 1430 PNRVSQARPSVQLRYPNG 1447


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 479 RPRCLKSNMFLGLDISPVSTS*SNFVIENCMES 577
           +P  +  N+ +GLDI+ ++   S+FV+   +E+
Sbjct: 207 KPCSINENLKMGLDIASITAQASSFVVWPLVEN 239



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 416  PNTATQRLPSVSMVVPSG 469
            PN  +Q  PSV +  P+G
Sbjct: 1430 PNRVSQARPSVQLRYPNG 1447


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 649 EDYRNCVIIKRPC 611
           E+Y NC++ K+PC
Sbjct: 43  ENYVNCLLEKKPC 55


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 19/77 (24%), Positives = 29/77 (37%)
 Frame = +2

Query: 206 GSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTNKISRFGPPKVAEVTCSAGIANFCRISPF 385
           G+      + +K A        P    A   NK+S   PP +A+     G   + + SP 
Sbjct: 14  GAQIPAMSMNVKAAEHPSLRGTPLAMLAAQCNKLSNKSPPPLADAAVGKGFHPW-KKSP- 71

Query: 386 LGLILSTHEPPNTATQR 436
            G    +  P +  TQR
Sbjct: 72  QGAPSPSSTPSSLPTQR 88


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +3

Query: 417 QTRPPKGCRRCRWLY 461
           Q  PP     C WLY
Sbjct: 89  QANPPISTEHCDWLY 103


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,280
Number of Sequences: 336
Number of extensions: 3716
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)