Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b08r
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    30   0.27 
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    30   0.36 
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    27   2.5  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    27   3.3  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   4.4  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    26   5.8  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   7.7  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    25   7.7  

>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 528 QYLHHNQISLSKTAWNLCNKMPFPSSPKQGRLIMTQ 635
           Q L H+ +SL + + N+  + P P  P+Q  +I+T+
Sbjct: 233 QQLVHDSVSLRRPSSNIPAQKPIPPKPEQNEIIITK 268


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 22/83 (26%), Positives = 34/83 (40%)
 Frame = -1

Query: 662  MGN*RRLSKLCHYQTALLGT*RKRHFITQIPCSFR*RNLIMM*ILEKYPTPETYLTLNSA 483
            +G+ R +S +  + T L+G           P  F    L++  I+ KY   +TY T  + 
Sbjct: 1106 LGHVRSMSGIGFFHTCLMGVFLGTTTYLLSPVDFANNPLLLFQIISKYKIKDTYATFQTL 1165

Query: 482  VYKAFRTVQPSTPTATFGWPCLE 414
             Y     +Q   PT      CLE
Sbjct: 1166 NY-----IQNQQPTKWPNLSCLE 1183


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 377 SPFLGLILSTHEPPNTATQRLPSVSMVVPSGMP 475
           S  LGL+L       T+T  LP++S + PS MP
Sbjct: 442 SLLLGLVLDELVFSTTSTTPLPALSHLFPSNMP 474


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 490 FKVKYVSGVGYFSSIYIIIKFRYRKLHGICVIKCLF 597
           ++++ + G G F+ +Y++      KL+ +  IKC F
Sbjct: 32  YRIQKLLGEGGFAFVYLVQNVSNEKLYALKKIKCSF 67


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +2

Query: 371 RISPFLGLILSTHEPP---NTATQRLPSVSMVVPSGMP 475
           +ISPF+G+ ++TH+     +T   R+    ++V +G+P
Sbjct: 596 KISPFIGIFINTHQRAVFISTDGGRICRPLIIVQNGLP 633


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 481 STRHSG-RYNHRHRRQPLGGRVWRLMRAQDQS*KRRNPTKISNSR 350
           S +++G R NHR R QP   R W L+  +    +R    K    +
Sbjct: 4   SFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKK 48


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 194 TLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTNKIS 310
           ++++  P TPS  TI   P   S  LP+   A+ T  IS
Sbjct: 187 SMSVPPPLTPSASTINDQPFSNSFDLPSQVIADGTGAIS 225


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 597 EKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDF 493
           E+ FY  DSM F + K +  VDT  + + R++ ++
Sbjct: 321 EQLFYVMDSMGFEVLKHN-SVDTTYMGDKRSMLEW 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,400
Number of Sequences: 5004
Number of extensions: 62400
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)