Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b08r
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0878 + 25606788-25606926,25607205-25607279,25607362-256074...    30   2.0  
07_03_1255 + 25234072-25234220,25235052-25235288,25235713-252358...    29   4.5  
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722...    29   4.5  
11_01_0660 + 5382460-5382764,5383854-5384348,5384454-5384541,538...    28   6.0  
02_04_0290 - 21627733-21628353,21628424-21628663,21628874-216292...    28   6.0  
02_02_0398 - 9777596-9778146,9778229-9778400,9778522-9778639,977...    28   6.0  
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396...    28   6.0  

>06_03_0878 +
           25606788-25606926,25607205-25607279,25607362-25607426,
           25607504-25607606,25607712-25607762,25608271-25608424,
           25608781-25608925,25609039-25609144,25609267-25609415
          Length = 328

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 501 FDFKQRGLQGIPDGTTIDTDGNL 433
           F F  R L G PD  T+D DG+L
Sbjct: 39  FSFSSRPLGGSPDAVTVDEDGDL 61


>07_03_1255 +
           25234072-25234220,25235052-25235288,25235713-25235845,
           25235935-25236237
          Length = 273

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/82 (23%), Positives = 37/82 (45%)
 Frame = -3

Query: 666 KDGKLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQ 487
           + G+   +++ +  +NG+A    E      ++M+F   +       GE +    IF    
Sbjct: 96  RTGEASVVLDGLGFANGVALPPDEAFVVVCETMRFRCLRVWLK---GEKAGEAEIF---V 149

Query: 486 RGLQGIPDGTTIDTDGNLWVAV 421
             L G PD   + +DG+ W+A+
Sbjct: 150 DNLPGNPDNIRLGSDGHFWIAL 171


>03_06_0090 +
           31570588-31570710,31570962-31571080,31572215-31572284,
           31572544-31573492,31574789-31575699
          Length = 723

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 452 STPTATFGWPCLEAHACSRSILKTEKSYKN 363
           STPTA FGWP  +A A + +        KN
Sbjct: 265 STPTALFGWPINDAAAAAAAAAGDRPRRKN 294


>11_01_0660 +
           5382460-5382764,5383854-5384348,5384454-5384541,
           5384629-5384691,5384965-5385125,5385214-5385289,
           5385395-5385454,5385555-5385662,5385746-5385982,
           5386192-5386307,5386756-5386813
          Length = 588

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 320 PPKVAEVTCSAGIANFCRI-SPFLGLILSTHEPPNTATQRLPSVSMVVP 463
           P   A  + +AG A+     S  LG   ++ EPP+  T R+P  S V+P
Sbjct: 63  PAPSAASSSAAGSASASSAGSSSLGSSAASDEPPDLGTYRVPDASYVLP 111


>02_04_0290 -
           21627733-21628353,21628424-21628663,21628874-21629214,
           21630934-21631612,21631893-21631962,21632063-21632190
          Length = 692

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
 Frame = +2

Query: 260 SCSLPTLQQAEVTNKISRFGPPKVAEVTCS-----AGIANFCRISPFLGLILSTHEPPNT 424
           +CS P+ +Q  V   I    PP+   V+C        +A   R +P L    S   PP++
Sbjct: 359 ACSAPSREQRMVVESIISITPPQRDSVSCGFLLRLLRLAIMLRAAPALPEYYSGRMPPSS 418

Query: 425 ATQRLPSVS 451
           A     S S
Sbjct: 419 AAAASASAS 427


>02_02_0398 -
           9777596-9778146,9778229-9778400,9778522-9778639,
           9778751-9779014,9779287-9779354,9779520-9780145,
           9780257-9780412,9780528-9780625,9780741-9780832,
           9780940-9781011
          Length = 738

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 218 TPSPVTIKVAPEGGSCSLPTLQQAEVTNKISRFGPPKVAEVTCSAG 355
           T S    ++  +G SC   TL    +T+K+    PP +     S G
Sbjct: 357 TASSTKFQMLVDGSSCDTQTLASINITSKVVLCSPPSLMPPRLSLG 402


>01_06_1507 -
           37838645-37839311,37839393-37839499,37839588-37839663,
           37839747-37839869,37840051-37840208,37840311-37840385,
           37840466-37840506,37840594-37840670,37840755-37840883,
           37840990-37841060,37841237-37841332,37841489-37841584,
           37841681-37841953,37842871-37842957,37843101-37843178,
           37843350-37843514,37843622-37843768,37843921-37843983,
           37844082-37844201,37844352-37844543,37844672-37844748,
           37845094-37845196,37845684-37845887
          Length = 1074

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 188 NLTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTN 301
           N+T  LGSPF P    + V P   S +LP   +  +T+
Sbjct: 611 NITFELGSPFKPFDQLMGVFPAASSHALPVQYRQLMTD 648


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,344,047
Number of Sequences: 37544
Number of extensions: 430863
Number of successful extensions: 1116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)