Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b08r
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical pr...    38   0.007
Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U80450-5|AAB37830.1|  587|Caenorhabditis elegans Kinesin-like pr...    29   4.1  
AB032080-1|BAA92263.2|  587|Caenorhabditis elegans kinesin like ...    29   4.1  
Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF099925-9|AAC69500.1|  150|Caenorhabditis elegans Hypothetical ...    28   7.1  

>U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical
           protein F21F3.1 protein.
          Length = 350

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 26/87 (29%), Positives = 41/87 (47%)
 Frame = -3

Query: 621 NGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGLQGIPDGTTIDTD 442
           +G  WD  EK+F   ++    +   + +     IS  + + D    GL  +P G TID +
Sbjct: 79  SGRVWD--EKSFNDHETFNKDLGVIN-NKTIAIISREKKVIDEFGAGLFYMPHGLTIDNN 135

Query: 441 GNLWVAVFGGSCVLKINPKNGEILQKL 361
           G+ WV   G   V KI+ K  +I+  L
Sbjct: 136 GDYWVTDVGSHQVHKIDAKTQKIVMSL 162


>Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical
           protein M163.5 protein.
          Length = 435

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 29/118 (24%), Positives = 49/118 (41%)
 Frame = -3

Query: 657 KLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGL 478
           +LEK  + + L  G  + L+  A +   + + +  K  + V+   + N  +  +     +
Sbjct: 115 RLEKSCKQLELIRGSMFSLQVDANFSNCNKKPTTAKLPFSVEYFIVENESDFIETFSNAM 174

Query: 477 QGIPDGTTIDTDGNLWVAVFGGSCVLKINPKNGEILQKLAIPAEQVTSATFGGPNLDI 304
              PDG+  D DG  ++A  G +   K   KN  I        EQ    TF  P L+I
Sbjct: 175 YASPDGSLYDADG--FIAPLGPA---KKKRKNAPIAAN-----EQQNDVTFIKPPLNI 222


>U80450-5|AAB37830.1|  587|Caenorhabditis elegans Kinesin-like
           protein protein 15 protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 27/98 (27%), Positives = 40/98 (40%)
 Frame = +2

Query: 191 LTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTNKISRFGPPKVAEVTCSAGIANFC 370
           +T+   +   PS +     P  G  SLP  +++ +    S   P    + T S  I+   
Sbjct: 48  ITIGAAARRPPSRLPTPTTPATGRASLP--ERSAMAKPASCSRPIPTMQSTASR-ISTLT 104

Query: 371 RISPFLGLILSTHEPPNTATQRLPSVSMVVPSGMPCRP 484
             S F  L   T  PP  +TQR  + S + PS    RP
Sbjct: 105 AASTFRQL--RTGRPPPPSTQRSTATSSLKPSVTRARP 140


>AB032080-1|BAA92263.2|  587|Caenorhabditis elegans kinesin like
           protein-15 protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 27/98 (27%), Positives = 40/98 (40%)
 Frame = +2

Query: 191 LTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTNKISRFGPPKVAEVTCSAGIANFC 370
           +T+   +   PS +     P  G  SLP  +++ +    S   P    + T S  I+   
Sbjct: 48  ITIGAAARRPPSRLPTPTTPATGRASLP--ERSAMAKPASCSRPIPTMQSTASR-ISTLT 104

Query: 371 RISPFLGLILSTHEPPNTATQRLPSVSMVVPSGMPCRP 484
             S F  L   T  PP  +TQR  + S + PS    RP
Sbjct: 105 AASSFRQL--RTGRPPPPSTQRSTATSSLKPSVTRARP 140


>Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical protein
            R09E10.5 protein.
          Length = 1459

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/77 (28%), Positives = 32/77 (41%)
 Frame = -1

Query: 575  IPCSFR*RNLIMM*ILEKYPTPETYLTLNSAVYKAFRTVQPSTPTATFGWPCLEAHACSR 396
            IP S R   + +   LE+YP  +    L       +  VQP+  T   G   LEA    R
Sbjct: 894  IPQSVRTPEVRIQTRLERYPNRKVDFGLLGRYISQYELVQPTNATVITG-IALEATGTER 952

Query: 395  SILKTEKSYKN*QFPPN 345
             I+ T K  +  ++  N
Sbjct: 953  VIVMTRKDTRRFRYRTN 969


>AF099925-9|AAC69500.1|  150|Caenorhabditis elegans Hypothetical
           protein K01A2.9 protein.
          Length = 150

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 106 VGIYYEILVFWKKLY*NIFVHFILICLI 23
           V ++Y +LV W K+   +  HF + CL+
Sbjct: 34  VAMFYFLLVQWSKVDIPVITHFQIFCLV 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,573,562
Number of Sequences: 27780
Number of extensions: 364538
Number of successful extensions: 1052
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)