Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b08r
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.3  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +2

Query: 173 NHVVHNLTLTLGSPFTPSPVTIKVAPEGGSCSL 271
           +H  +N+T     PF  + + + V P    C L
Sbjct: 209 SHPAYNMTFAQNGPFNTTTIFVPVKPCPWICEL 241


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 510 WGWIFLQYLHHNQISLS 560
           W WI L Y   N ISL+
Sbjct: 59  WRWIRLTYGQTNHISLT 75


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 510 WGWIFLQYLHHNQISLS 560
           W WI L Y   N ISL+
Sbjct: 97  WRWIRLTYGQTNHISLT 113


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 438 NLWVAVFGGSCVLKINPKNGEILQKLAIPAEQV 340
           N+WV        LK NP+    ++ L +P+E +
Sbjct: 83  NVWVEQRWNDYKLKWNPEEYGGVEMLYVPSENI 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,399
Number of Sequences: 438
Number of extensions: 4654
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)