Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b08r
(683 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51430.1 68416.m05633 strictosidine synthase, putative (YLS2)... 32 0.41
At3g12060.1 68416.m01500 expressed protein similar to hypothetic... 31 0.71
At3g31980.1 68416.m04050 hypothetical protein low similarity to ... 30 1.6
At3g51440.1 68416.m05634 strictosidine synthase family protein s... 29 2.2
At3g55540.1 68416.m06167 nuclear transport factor 2 (NTF2) famil... 29 3.8
At3g09080.1 68416.m01067 transducin family protein / WD-40 repea... 29 3.8
At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-... 29 3.8
At5g61090.1 68418.m07665 proline-rich family protein contains pr... 28 5.0
At5g59790.1 68418.m07495 expressed protein 28 5.0
At3g51420.1 68416.m05632 strictosidine synthase family protein s... 28 5.0
At5g46750.1 68418.m05759 human Rev interacting-like family prote... 28 6.6
At4g25720.1 68417.m03702 glutamine cyclotransferase family prote... 28 6.6
At4g17890.1 68417.m02666 human Rev interacting-like family prote... 28 6.6
At3g59530.2 68416.m06644 strictosidine synthase family protein s... 28 6.6
At3g59530.1 68416.m06643 strictosidine synthase family protein s... 28 6.6
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 27 8.8
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 27 8.8
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 27 8.8
>At3g51430.1 68416.m05633 strictosidine synthase, putative (YLS2)
similar to hemomucin [Drosophila
melanogaster][GI:1280434], strictosidine synthase
[Rauvolfia serpentina][SP|P15324]; contains
strictosidine synthase domain PF03088; identical to cDNA
YLS2 mRNA for strictosidine synthase-like protein
GI:13122281
Length = 371
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 486 RGLQGIPDGTTIDTDGNLWVAVFGGSCVL 400
+GL G PD D DG+ W+A+ G+ L
Sbjct: 255 QGLPGYPDNIRYDGDGHYWIAMVSGASTL 283
>At3g12060.1 68416.m01500 expressed protein similar to hypothetical
protein GB:CAB82953 GI:7340710 from [Arabidopsis
thaliana]
Length = 556
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 179 VVHNLTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTN 301
VV + LT+ F+PSP+T+ +AP S LP + + +N
Sbjct: 44 VVTFVALTVFLAFSPSPITVALAPSISSYVLPNITVSNSSN 84
>At3g31980.1 68416.m04050 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 1099
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 185 HNLTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTNKI 307
HNLTL +G TP + + P+GG C+ LQ ++ N I
Sbjct: 947 HNLTLKIG---TPVMLLRNIDPKGGLCNGTRLQVTQMGNHI 984
>At3g51440.1 68416.m05634 strictosidine synthase family protein
similar to hemomucin [Drosophila
melanogaster][GI:1280434], strictosidine synthase
[Rauvolfia serpentina][SP|P15324]; contains
strictosidine synthase domain PF03088
Length = 371
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 486 RGLQGIPDGTTIDTDGNLWVAVFGGSCVL 400
+GL G PD D DG+ W+A+ G L
Sbjct: 255 QGLPGYPDNIRYDGDGHYWIAMPSGVTTL 283
>At3g55540.1 68416.m06167 nuclear transport factor 2 (NTF2) family
protein contains similarity to Swiss-Prot:Q9P926 nuclear
transport factor 2 (NTF-2) [Candida albicans]
Length = 334
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 348 EQVTSATFGGPNLDILFVTSACCNVGKEQLPPSGATFMVTG 226
EQ+ S + G + D++ + CN E GA MVTG
Sbjct: 82 EQIVSCDYEGASFDVMSFAAQSCNTSSE----DGAFIMVTG 118
>At3g09080.1 68416.m01067 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats; similar to
JNK-binding protein JNKBP1 (GP:6069583) [Mus musculus]
Length = 1026
Score = 28.7 bits (61), Expect = 3.8
Identities = 32/142 (22%), Positives = 60/142 (42%)
Frame = -3
Query: 636 TVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGLQGIPDGT 457
T +LS+G +D+ A T + ++ + D ++ +I + + + FKQ G P
Sbjct: 521 TQTLSHGTIYDV---AVDPTSGLVVTVGQ-DKKINIFDIESGKLVRSFKQDRDHGDPVKV 576
Query: 456 TIDTDGNLWVAVFGGSCVLKINPKNGEILQKLAIPAEQVTSATFGGPNLDILFVTSACCN 277
+D N V + + ++ GE++ + E VT F I+ V S C
Sbjct: 577 ILDPSCNYLVCSYSNRTICFVDFVTGELVAQATGHGEAVTGVIFLPDCKHIISVASDGC- 635
Query: 276 VGKEQLPPSGATFMVTGLGVKG 211
+ +LP AT ++ + G
Sbjct: 636 IFVWKLPLRMATRIIRAVNENG 657
>At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-10)
/ HD-ZIP transcription factor 10 / homeobox protein
(GLABRA2) identical to homeobox protein (GLABRA2)
(homeobox-leucine zipper protein ATHB-10) (HD-ZIP
protein ATHB-10) GB:P46607 [Arabidopsis thaliana]
Length = 747
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 392 LILSTHEPPNTATQRLPSVSMVVPSGMPCRPRCLKS 499
L+L+ H+P N Q LPS ++P G+ RP + S
Sbjct: 657 LVLAGHDPSNI--QILPSGFSIIPDGVESRPLVITS 690
>At5g61090.1 68418.m07665 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
common family members: At4g18570, At3g25690, At4g04980
[Arabidopsis thaliana]
Length = 344
Score = 28.3 bits (60), Expect = 5.0
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Frame = +2
Query: 161 LCNVNHVVHNLTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTNKISRFGP-PKVAE 337
LC +N +V N + SP +IKV P G L + E +N ++R P P+ ++
Sbjct: 5 LCYLNQIVENFSSITMSPGQLPSDSIKVVP--GRSKL----RVESSNPVARGNPTPRASK 58
Query: 338 VTCSAGIANFCRISPFLGLILSTHEPPNTATQRLPSVSMVVPSGMPCRPR 487
V + S G+ +S +P AT ++P V PS P PR
Sbjct: 59 VKLLSPEEAMKLTSGGNGVAVSPVKPAR-ATSQVP--KRVPPSRTPEAPR 105
>At5g59790.1 68418.m07495 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 630 SLSNGLAW-DLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFD 496
S NG W DL E F + Q + K +D+ ISNPR++ +
Sbjct: 103 SYKNGFVWHDLSEDDFIFPVQGQEYVLKGSEVLDSCLISNPRSLLE 148
>At3g51420.1 68416.m05632 strictosidine synthase family protein
similar to hemomucin [Drosophila
melanogaster][GI:1280434], strictosidine synthase
[Rauvolfia serpentina][SP|P15324]; contains
strictosidine synthase domain PF03088
Length = 370
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 486 RGLQGIPDGTTIDTDGNLWVAV 421
+GL G PD D DG+ W+A+
Sbjct: 255 QGLPGYPDNIRYDGDGHYWIAL 276
>At5g46750.1 68418.m05759 human Rev interacting-like family protein
/ hRIP family protein contains Pfam profile PF01412:
Putative GTP-ase activating protein for Arf
Length = 402
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 304 NIQIWAPESRRSYLFGGN 357
N+ W+PE R+ +FGGN
Sbjct: 66 NLDSWSPEQLRTMMFGGN 83
>At4g25720.1 68417.m03702 glutamine cyclotransferase family protein
contains Pfam profile: PF05096 glutamine
cyclotransferase
Length = 320
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/83 (25%), Positives = 44/83 (53%)
Frame = -3
Query: 618 GLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGLQGIPDGTTIDTDG 439
GLA D KA + +D T + D T ++++ ++I + R ++ + + I+ +
Sbjct: 179 GLATD--GKALFGSDGTS---TLYRMDPQTMKVTD-KHIVRYNGREVRYLNELEYINNE- 231
Query: 438 NLWVAVFGGSCVLKINPKNGEIL 370
+W V+ C+ +I+PK+G +L
Sbjct: 232 -VWANVWQSDCIARISPKDGSLL 253
>At4g17890.1 68417.m02666 human Rev interacting-like family protein
/ hRIP family protein contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 413
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 304 NIQIWAPESRRSYLFGGN 357
N+ W+PE R+ +FGGN
Sbjct: 69 NLDSWSPEQLRTMMFGGN 86
>At3g59530.2 68416.m06644 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]
Length = 403
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = -3
Query: 645 IIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGLQGIP 466
++E ++ NG+ + +T++ + K Y ++ ++ + D L G P
Sbjct: 249 VLEGLAFPNGIQLSKDQSFLLFTETTNCRLVK--YWLEGPKMGEVEVVAD-----LPGFP 301
Query: 465 DGTTIDTDGNLWVAV 421
D I+ +G WVA+
Sbjct: 302 DNVRINEEGQFWVAI 316
>At3g59530.1 68416.m06643 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]
Length = 403
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = -3
Query: 645 IIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRGLQGIP 466
++E ++ NG+ + +T++ + K Y ++ ++ + D L G P
Sbjct: 249 VLEGLAFPNGIQLSKDQSFLLFTETTNCRLVK--YWLEGPKMGEVEVVAD-----LPGFP 301
Query: 465 DGTTIDTDGNLWVAV 421
D I+ +G WVA+
Sbjct: 302 DNVRINEEGQFWVAI 316
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 507 NIFDFKQRGLQGIPDGTTIDTDGNLWVAVFGGSCVLKINPKNG 379
N+ + RG G+P + + D N + +G S L +P NG
Sbjct: 330 NVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGTSSGLSSSPFNG 372
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 507 NIFDFKQRGLQGIPDGTTIDTDGNLWVAVFGGSCVLKINPKNG 379
N+ + RG G+P + + D N + +G S L +P NG
Sbjct: 330 NVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGTSSGLSSSPFNG 372
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 507 NIFDFKQRGLQGIPDGTTIDTDGNLWVAVFGGSCVLKINPKNG 379
N+ + RG G+P + + D N + +G S L +P NG
Sbjct: 330 NVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGTSSGLSSSPFNG 372
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,553,536
Number of Sequences: 28952
Number of extensions: 340467
Number of successful extensions: 897
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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