Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b08f
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 0.71
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 27 1.2
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 27 2.2
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 2.9
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 26 2.9
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 26 3.8
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 6.6
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 25 6.6
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 25 6.6
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 25 6.6
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su... 25 8.7
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 25 8.7
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 8.7
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 8.7
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 8.7
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 25 8.7
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 0.71
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 353 LPSSPSHCMKRNLRSTPTTNWSVVPSTGNMKPTLPSKL 240
LPS PS R TP T +++P G M P K+
Sbjct: 509 LPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSADQPIKV 546
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 1.2
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 103 IEKITEPLTLGEGPHWDERQQALYFVSIQDKTIHKYVPTTEKHTKTSLDGRVGFIL 270
I + E G P WDE+++AL F Q K +P T + T R F L
Sbjct: 516 ISAVDESAHQGHLPGWDEKEEALIFSLAQGMNPMK-MPLTPRRASTGPRPRPTFQL 570
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 483 TWRIFMTHSSSKQPPTRICFA 421
T+R F T SS+K P +CFA
Sbjct: 21 TFRKFTTESSTKSPIADVCFA 41
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 338 SHCMKRN--LRSTPTTNWSVVPSTGNMKPTLPSKLV 237
SH N + + P N S VP+TGN+K L V
Sbjct: 1095 SHAAHSNNVIGTQPHVNVSAVPNTGNLKDALEGSAV 1130
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 242 LVFVCFSVVGTYLCIVLSWMLTKYS 168
++F C V+ L ++LSW T+YS
Sbjct: 248 ILFACQLVLDLALLLILSWGYTRYS 272
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 170 YTL*ASKIKLYTNMYQLLKNI 232
Y + A+K K +T YQLLKNI
Sbjct: 717 YHVSATKKKEFTRQYQLLKNI 737
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.0 bits (52), Expect = 6.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 166 ALYFVSIQDKTIHKYVPTTEKHTKTSLDGRVGFILPVEGTTDQFVV 303
A+ +I+ K + K V + K K SL+ + LP+EGT F V
Sbjct: 295 AINLSAIKSKHLQKIVVLSSKG-KVSLESPMSPSLPIEGTFRSFRV 339
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.0 bits (52), Expect = 6.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 101 LTDITKLFKVKILNLCN*QIKTAKAASKLV 12
+T ++ L ++NL N Q + A ASKLV
Sbjct: 135 MTQLSHLLPSSLINLSNGQSRRAMLASKLV 164
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 269 YQWKVQQTNL*WESNASSFSYSGMER 346
Y W + WES++S FS M+R
Sbjct: 293 YDWMLLNDGKGWESSSSHFSVVAMKR 318
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 6.6
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +1
Query: 136 EGPHWDERQQALYFVSIQDKTIHKYVPTTEKH 231
EGP W Y D I VPT EK+
Sbjct: 392 EGPRWTVSDPPTYAKQTIDSNICVLVPTAEKN 423
>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 270
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 61 FSILTLNNLVMSVRIEKITEPLTLGEGPHWDERQQALYF 177
+S + L+N + +E E L E WD R +YF
Sbjct: 183 YSEIPLSNATSLLYLENTKETEKLAEERGWDIRDGVIYF 221
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 413 LMMAKQILVGGCLLELWVMKILQVTLREPSLSL 511
LM K LVG +W + L EPSL++
Sbjct: 189 LMKKKLYLVGESYGSIWSANFAEALLSEPSLNI 221
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 463 GHEDPPGNFERTKPLF 510
G E PGN E T PLF
Sbjct: 153 GPETDPGNMETTDPLF 168
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 359 TLLPSSPSHCMKRNLRSTPTTNWSVVPSTGN 267
T+LP + + +ST TTN S P+TG+
Sbjct: 441 TMLPIPGTRRIPTYSQSTSTTNPSATPTTGD 471
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 346 DGSKVAVLKELGEVDKDRPNNRIN 417
D + +A K LGE + R N R+N
Sbjct: 163 DNNVIAAWKMLGECHRQRGNGRVN 186
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +3
Query: 225 KTYKNQFRWEGWFHITSGRYNRPICSG 305
K K W G F + S YN + SG
Sbjct: 48 KFQKENLNWNGLFQLNSISYNSGVVSG 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,577
Number of Sequences: 5004
Number of extensions: 44736
Number of successful extensions: 125
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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