Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b08f
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_02_0018 - 8595479-8595678,8595782-8595935,8596396-8597032,859... 30 1.2
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 29 2.2
01_06_0115 + 26585481-26586401,26586501-26586556,26586747-265868... 28 5.0
07_03_0301 + 16449586-16449671,16450028-16451135 27 6.6
03_06_0641 - 35232858-35232892,35233066-35233290,35233785-352339... 27 8.8
03_02_0087 + 5553730-5553842,5555221-5555353,5555887-5556023,555... 27 8.8
03_01_0596 + 4398920-4398982,4399395-4399797,4400234-4400340,440... 27 8.8
>04_02_0018 -
8595479-8595678,8595782-8595935,8596396-8597032,
8597126-8597217
Length = 360
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +3
Query: 132 GGRAPLG*TSASAILCEHPR*NYTQICTNY*KTYKNQFRWEGWFHITSGRYNRPICSGSR 311
G R +G +AS + CEH R + C TY F W+G IT G Y+ + + R
Sbjct: 89 GDRVGVGCIAASCLDCEHCRRSEENYCDKVALTYNGIF-WDG--SITYGGYSGMLVAHKR 145
>05_07_0328 +
29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 283 TTDQFVVGVER-KFLFIQWDGEDGSKVAVLKELGEVDK--DRPNNRINDGKADPRGRL 447
T D + ER KF +QWDGE + + +G+V RP + G DP RL
Sbjct: 272 TQDFLFIATERYKFCVLQWDGEKSE--LLTRAMGDVSDRIGRPTDNGQIGIIDPDCRL 327
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 349 GSKVAVLKELGEVDKDRPNNRIN 417
G KVA K+L DKDRP+++ N
Sbjct: 8 GGKVAEPKDLAATDKDRPSSKKN 30
>01_06_0115 +
26585481-26586401,26586501-26586556,26586747-26586876,
26587396-26587506,26587606-26587674,26588125-26588198,
26588446-26588581,26588702-26588795,26588901-26589000,
26589100-26589224,26589597-26589634,26589662-26589742,
26589868-26589972,26590102-26590166,26590371-26590572,
26591073-26591159,26591238-26591294,26591369-26591458,
26591572-26591658,26592204-26592278,26592363-26592463,
26592565-26592655
Length = 964
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 272 GNMKPTLPSKLVFVCFSVVGTYL 204
G K + P K+ +CF + GTYL
Sbjct: 427 GRWKSSKPDKVAVICFGMEGTYL 449
>07_03_0301 + 16449586-16449671,16450028-16451135
Length = 397
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 412 INDGKADPRGRLFAGTM-GHEDPPGNFERTKPL 507
IND D ++ GT+ HE PPG E PL
Sbjct: 79 INDDVIDDNDQIVTGTIYEHETPPGGGEPRHPL 111
>03_06_0641 -
35232858-35232892,35233066-35233290,35233785-35233929,
35234295-35234406,35234477-35234535,35234981-35235022,
35235372-35235434,35235636-35235697,35236298-35236451,
35236572-35236651,35237646-35237709,35237791-35237959,
35238002-35238114,35238361-35238507
Length = 489
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 106 EKITEPLTLGEGPHWDERQQALYFVSIQDKTIHKYVPTTEKHTKTSLDGRVGFIL 270
EKI + LGE DE Q+ + K + PT++ T+ D R+ F+L
Sbjct: 234 EKIKKAEELGEQGMVDEAQKVMEEAEALKKLAARREPTSDPTKYTAADVRIKFML 288
>03_02_0087 +
5553730-5553842,5555221-5555353,5555887-5556023,
5556254-5556311,5556403-5556642
Length = 226
Score = 27.1 bits (57), Expect = 8.8
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Frame = -3
Query: 329 MKRNLRSTPTTNW--SVVPS---TGNMKPTL--PSKLVFVCFSVVGTYLCIVLSWMLTKY 171
+ ++L S P ++ VVP+ T +K L P KLV S +C W+L K
Sbjct: 140 LSKSLLSKPQHHYITRVVPNFHGTFQLKVVLKEPLKLVENLLSSADILVCNTHPWLLAKS 199
Query: 170 SAC*RSS----QWGPSPSVRGSVIFS 105
SA R++ + PSV G+++FS
Sbjct: 200 SALTRANCGAVIYHTDPSVDGTLLFS 225
>03_01_0596 +
4398920-4398982,4399395-4399797,4400234-4400340,
4400458-4400523
Length = 212
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 344 SPSHCMKRNLRSTPTTNWSVVPS 276
S C +R LRS T N+ VVPS
Sbjct: 173 SSKACKRRKLRSALTRNYQVVPS 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,601,918
Number of Sequences: 37544
Number of extensions: 282352
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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