Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b08f
(511 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z81552-2|CAB04485.1| 331|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z81552-1|CAB04484.1| 331|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 27 7.9
X94702-1|CAA64363.1| 331|Caenorhabditis elegans pes-2 protein. 27 7.9
X94701-1|CAA64362.1| 331|Caenorhabditis elegans pes-2 protein. 27 7.9
U70853-8|AAB09145.3| 191|Caenorhabditis elegans Hypothetical pr... 27 7.9
U70853-7|ABQ13066.1| 228|Caenorhabditis elegans Hypothetical pr... 27 7.9
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 27 7.9
>Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical
protein F01G4.5 protein.
Length = 269
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 242 LVFVCFSVVGTYLCIVLSWMLTKYSAC*RSSQWGPSPSVRGSVI 111
L F CF T LC + + LT + R +W P + +VI
Sbjct: 141 LHFNCFDAYATKLCYLCYYTLTVLWSLVRGKKWNPLRERKDTVI 184
>Z81552-2|CAB04485.1| 331|Caenorhabditis elegans Hypothetical
protein F56G4.3 protein.
Length = 331
Score = 27.1 bits (57), Expect = 7.9
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 190 DKTIHKYVPTTEKHTKTSLDGRVG--FILPVE-GTTDQFVVGVERKF-LFIQWDGEDGSK 357
+KTI+ + PTTEK +T +V FI + G + +G E I W E
Sbjct: 103 EKTINIFWPTTEKEDRTFAVMKVAEHFIYTLGLGEFESVTLGQENHAGRIIDWANEKNLN 162
Query: 358 VAVLKELGEVDKD 396
+A +G VDK+
Sbjct: 163 IANF-TIGNVDKE 174
>Z81552-1|CAB04484.1| 331|Caenorhabditis elegans Hypothetical
protein F56G4.2 protein.
Length = 331
Score = 27.1 bits (57), Expect = 7.9
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 190 DKTIHKYVPTTEKHTKTSLDGRVG--FILPVE-GTTDQFVVGVERKF-LFIQWDGEDGSK 357
+KTI+ + PTTEK +T +V FI + G + +G E I W E
Sbjct: 103 EKTINIFWPTTEKEDRTFAVMKVAEHFIYTLGLGEFESVTLGQENHAGRIIDWANEKNLN 162
Query: 358 VAVLKELGEVDKD 396
+A +G VDK+
Sbjct: 163 IANF-TIGNVDKE 174
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 379 GEVDKDRPNNRINDGKADPRG-RLFAGTMGHEDPPGN 486
G D+ +P G+A PRG R AG G + PG+
Sbjct: 209 GHSDEPKPGQPGQPGRAGPRGPRGVAGIKGKDGAPGS 245
>X94702-1|CAA64363.1| 331|Caenorhabditis elegans pes-2 protein.
Length = 331
Score = 27.1 bits (57), Expect = 7.9
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 190 DKTIHKYVPTTEKHTKTSLDGRVG--FILPVE-GTTDQFVVGVERKF-LFIQWDGEDGSK 357
+KTI+ + PTTEK +T +V FI + G + +G E I W E
Sbjct: 103 EKTINIFWPTTEKEDRTFAVMKVAEHFIYTLGLGEFESVTLGQENHAGRIIDWANEKNLN 162
Query: 358 VAVLKELGEVDKD 396
+A +G VDK+
Sbjct: 163 IANF-TIGNVDKE 174
>X94701-1|CAA64362.1| 331|Caenorhabditis elegans pes-2 protein.
Length = 331
Score = 27.1 bits (57), Expect = 7.9
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 190 DKTIHKYVPTTEKHTKTSLDGRVG--FILPVE-GTTDQFVVGVERKF-LFIQWDGEDGSK 357
+KTI+ + PTTEK +T +V FI + G + +G E I W E
Sbjct: 103 EKTINIFWPTTEKEDRTFAVMKVAEHFIYTLGLGEFESVTLGQENHAGRIIDWANEKNLN 162
Query: 358 VAVLKELGEVDKD 396
+A +G VDK+
Sbjct: 163 IANF-TIGNVDKE 174
>U70853-8|AAB09145.3| 191|Caenorhabditis elegans Hypothetical
protein M01H9.4a protein.
Length = 191
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 258 NPPI*TGFCMFFSSWYIFVYSFI 190
N PI T FC FS +Y F+YS I
Sbjct: 161 NGPIDT-FCSIFSWFYTFIYSLI 182
>U70853-7|ABQ13066.1| 228|Caenorhabditis elegans Hypothetical
protein M01H9.4b protein.
Length = 228
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 258 NPPI*TGFCMFFSSWYIFVYSFI 190
N PI T FC FS +Y F+YS I
Sbjct: 198 NGPIDT-FCSIFSWFYTFIYSLI 219
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
T13H2.5a protein.
Length = 2471
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 76 LNNLVMSVRIEKITEPLTLGEGPHWDERQQALYFVSIQDKT 198
+ N + + +T P TL + H E QQ SIQ T
Sbjct: 1327 IENQTTTTNSDSLTRPNTLADNSHLGESQQIPVIESIQSST 1367
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,470,182
Number of Sequences: 27780
Number of extensions: 249942
Number of successful extensions: 538
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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