Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b08f
(511 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 4.2
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 21 5.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.4
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 21 9.8
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 21 9.8
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.8 bits (44), Expect = 4.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 241 SLDGRVGFILPVEGTTDQFVVGVE 312
++ GRVGF+ P E F+ G++
Sbjct: 975 NVQGRVGFVTPFEHR--HFISGID 996
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 21.4 bits (43), Expect = 5.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 262 FILPVEGTTDQFVVGVERKFLFIQW 336
F+L V G V G FL+I W
Sbjct: 231 FLLYVSGFITTEVAGTYAIFLYISW 255
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 283 TTDQFVVGVERKFLFIQW 336
T D++V+ K LF+QW
Sbjct: 285 TPDRYVMPSWIKMLFLQW 302
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 283 TTDQFVVGVERKFLFIQW 336
T D++V+ K LF+QW
Sbjct: 285 TPDRYVMPSWIKMLFLQW 302
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 283 TTDQFVVGVERKFLFIQW 336
T D++V+ K LF+QW
Sbjct: 285 TPDRYVMPSWIKMLFLQW 302
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 283 TTDQFVVGVERKFLFIQW 336
T D++V+ K LF+QW
Sbjct: 285 TPDRYVMPSWIKMLFLQW 302
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 283 TTDQFVVGVERKFLFIQW 336
T D++V+ K LF+QW
Sbjct: 285 TPDRYVMPSWIKMLFLQW 302
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 283 TTDQFVVGVERKFLFIQW 336
T D++V+ K LF+QW
Sbjct: 285 TPDRYVMPSWIKMLFLQW 302
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 283 TTDQFVVGVERKFLFIQW 336
T D++V+ K LF+QW
Sbjct: 353 TPDRYVMPSWIKMLFLQW 370
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 283 TTDQFVVGVERKFLFIQW 336
T D++V+ K LF+QW
Sbjct: 353 TPDRYVMPSWIKMLFLQW 370
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 20.6 bits (41), Expect = 9.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 194 KLYTNMYQLLKNIQKPV*MG 253
K+Y ++Q KNI++ V MG
Sbjct: 759 KIYIILFQPDKNIRRKVTMG 778
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 20.6 bits (41), Expect = 9.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 194 KLYTNMYQLLKNIQKPV*MG 253
K+Y ++Q KNI++ V MG
Sbjct: 849 KIYIILFQPDKNIRRKVTMG 868
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,493
Number of Sequences: 438
Number of extensions: 3109
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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