Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b08f
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05090.2 68416.m00553 transducin family protein / WD-40 repea...    30   0.79 
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea...    30   0.79 
At4g28990.1 68417.m04143 RNA-binding protein-related contains we...    28   3.2  
At2g21090.1 68415.m02503 pentatricopeptide (PPR) repeat-containi...    28   4.2  
At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family...    27   5.5  
At5g49690.1 68418.m06152 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.7  
At4g34610.1 68417.m04916 homeodomain-containing protein similari...    27   9.7  

>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to uncharacterized KIAA1449 protein
           (gi:7959157) [Homo sapiens]
          Length = 753

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 24/74 (32%), Positives = 31/74 (41%)
 Frame = +1

Query: 178 VSIQDKTIHKYVPTTEKHTKTSLDGRVGFILPVEGTTDQFVVGVERKFLFIQWDGEDGSK 357
           +S+Q    H Y PT  K  K S+     + L +  T    V G   K L + WD   GSK
Sbjct: 194 ISVQSSPSHGYTPTIAKGHKESV-----YALAMNDTGTMLVSGGTEKVLRV-WDPRTGSK 247

Query: 358 VAVLKELGEVDKDR 399
              L+  G  D  R
Sbjct: 248 SMKLR--GHTDNVR 259


>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to uncharacterized KIAA1449 protein
           (gi:7959157) [Homo sapiens]
          Length = 753

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 24/74 (32%), Positives = 31/74 (41%)
 Frame = +1

Query: 178 VSIQDKTIHKYVPTTEKHTKTSLDGRVGFILPVEGTTDQFVVGVERKFLFIQWDGEDGSK 357
           +S+Q    H Y PT  K  K S+     + L +  T    V G   K L + WD   GSK
Sbjct: 194 ISVQSSPSHGYTPTIAKGHKESV-----YALAMNDTGTMLVSGGTEKVLRV-WDPRTGSK 247

Query: 358 VAVLKELGEVDKDR 399
              L+  G  D  R
Sbjct: 248 SMKLR--GHTDNVR 259


>At4g28990.1 68417.m04143 RNA-binding protein-related contains weak
           similarity to Swiss-Prot:Q01844 RNA-binding protein EWS
           (EWS oncogene)(Ewing sarcoma breakpoint region 1
           protein) [Homo sapiens]
          Length = 347

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 337 DGEDGSKVAVLKELGEVDKDRPN-NRINDGKADPRG 441
           D EDG   A   E GEV +DRP+ NR +  K D  G
Sbjct: 29  DREDGRNAAGDYEPGEVSRDRPSFNRSDRYKGDNGG 64


>At2g21090.1 68415.m02503 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 597

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 97  VRIEKITEPLTLGEGPHWDERQQALYFV 180
           + IEK  E  T+ +G H   R++ +YF+
Sbjct: 555 IEIEKKVEAFTVSDGSHAHARKEEIYFI 582


>At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family
           protein
          Length = 523

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 337 DGEDGSKVAV-LKELGEVDKDRPNNRINDGKADPRGRLFAGTMGHE-DPPGNFERTKPL 507
           D   GS V V L+E+ +     P      G+ADP   +F   +G+E   P    R KPL
Sbjct: 166 DESQGSPVFVKLQEMQDATSSPPPPESKPGQADPPDNIF-NALGNEFSHPSGAGRGKPL 223


>At5g49690.1 68418.m06152 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 460

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 371 FNTATLLPSSPSHCMKRNLRSTPTTNWSVVP 279
           FN ATL    PS  +   +RSTP  +++VVP
Sbjct: 142 FNAATLCFMGPSSSLIEEIRSTP-EDFTVVP 171


>At4g34610.1 68417.m04916 homeodomain-containing protein similaritry
           to homeotic protein BEL1, Arabidopsis thaliana,
           PIR2:A57632
          Length = 532

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 307 VERKFLFIQWDGEDGSKVAVLKELGEVDK 393
           V RK L  Q DG DG +V ++  L  VD+
Sbjct: 273 VLRKCLGEQQDGSDGKRVGIISRLKYVDQ 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,946,629
Number of Sequences: 28952
Number of extensions: 233448
Number of successful extensions: 564
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)