Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b07r
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         28   0.086
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.3  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.7  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 0.086
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 545 PPLYGARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAG 402
           PP+   +LVQ    NAE+K+       +  +R+  +++QL A +   G
Sbjct: 45  PPIANCKLVQAPKLNAEVKRAITQQHSERDERLAHVQAQLGAAMGAVG 92


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 321 TLDLLGLESGEAEHADLVGDVLPGVRV 401
           T+ +   ++GE+E   +   V+PGV V
Sbjct: 55  TVTITATQTGESEMMVVTSGVIPGVAV 81


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 429 LAPHRDDPVRHLLYVSEPLLFEFGVGEY 512
           L P+   P R + Y S   ++  G+G Y
Sbjct: 14  LQPYDATPARIVCYFSNWAIYRPGIGRY 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,340
Number of Sequences: 336
Number of extensions: 2916
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)