Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b07r
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.) 219 2e-57
SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0) 152 3e-37
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.075
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 34 0.099
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_48861| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_25115| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 31 0.92
SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 31 1.2
SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 31 1.2
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 30 1.6
SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6) 30 1.6
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14) 30 2.1
SB_23043| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_8943| Best HMM Match : LTXXQ (HMM E-Value=0.45) 30 2.1
SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6) 30 2.1
SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4) 29 2.8
SB_45437| Best HMM Match : Ribosomal_L15e (HMM E-Value=0.53) 29 3.7
SB_28156| Best HMM Match : PAN (HMM E-Value=5.6) 29 3.7
SB_54205| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46) 29 4.9
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_53274| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_40048| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08) 28 6.5
SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018) 28 6.5
SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1) 28 8.6
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_41329| Best HMM Match : Arm (HMM E-Value=8.4e-07) 28 8.6
SB_35959| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 28 8.6
>SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 219 bits (535), Expect = 2e-57
Identities = 96/167 (57%), Positives = 134/167 (80%)
Frame = -1
Query: 710 FVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYG 531
F+++GH+++LAQSFAKNMGLYGERAG ++ + + A +++SQ+KI++R MYS+PP++G
Sbjct: 21 FIEDGHKIVLAQSFAKNMGLYGERAGMVSVVGESKEEADRILSQIKILIRPMYSSPPIHG 80
Query: 530 ARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCF 351
AR+ +L++ L+ QW +VK MADRII+MR QLR ++ G+ H W HITDQIGMFCF
Sbjct: 81 ARIAGLVLSDPALRAQWETEVKGMADRIISMRQQLRDNLKKQGSSHDWSHITDQIGMFCF 140
Query: 350 TGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIHKVTS 210
TG+KP+QVERL KEF +YLTKDGRISVAG++S +V Y+A A+H+ S
Sbjct: 141 TGMKPDQVERLIKEFSIYLTKDGRISVAGVTSGSVEYLASAMHEYCS 187
>SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)
Length = 512
Score = 152 bits (368), Expect = 3e-37
Identities = 73/173 (42%), Positives = 108/173 (62%)
Frame = -1
Query: 710 FVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYG 531
F +G +++ AQSFAKN GLY ERAG + + D+ A ++ SQ+K ++R M+SNPP +G
Sbjct: 307 FASQGFELIAAQSFAKNFGLYNERAGNVCVVTSDDDCAERIRSQMKALIRPMWSNPPNHG 366
Query: 530 ARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCF 351
AR+V IL N L+ +W V M R++ MR L + ++ G P W H+ DQ GMF F
Sbjct: 367 ARIVATILCNDTLQAEWRECVHTMGQRMLQMRQALFSKLKELGTPGTWNHVIDQRGMFSF 426
Query: 350 TGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIHKVTS*TESTH 192
TGL EQV LT++ H+YL +GRI+++ ++ NV + A+ +V TE H
Sbjct: 427 TGLNQEQVAFLTRKHHIYLLNNGRINISALTPNNVENV--ALKQVRRLTEKHH 477
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/42 (47%), Positives = 30/42 (71%)
Frame = -1
Query: 335 EQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIHKVTS 210
+QV RLT++ H+YL GRI++ G++ NV Y+A AIH V +
Sbjct: 467 KQVRRLTEKHHIYLLDSGRINICGLTPANVEYVARAIHDVVT 508
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 36.3 bits (80), Expect = 0.025
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Frame = -3
Query: 525 PRAGDTHQRRTQKAMARRRKADG-----GPDHHDAEPAPRRHRGRRQPAPLATHHRPDRH 361
PR G QRR + A R++ P +PRR R R P+P HHR R
Sbjct: 202 PRRGYRDQRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSP---HHRSHR- 257
Query: 360 VLLHRTQARAGRASDERVPRVPDERRTHFRRRHLLAKRELHRR 232
R+++R+ R R R P RR H R H K++ H++
Sbjct: 258 ---SRSRSRSPRRRHSR-SRSPTHRR-HRSRSHSPEKKK-HKK 294
Score = 31.9 bits (69), Expect = 0.53
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Frame = -3
Query: 453 PDHHDA-EPAPRR-HRGRRQPAPLATHHRPDRHVLLHRTQARAGRASD---ERVPRVPD- 292
P HH + P PRR +R +R+ + HHR R R+ R R+ R R P
Sbjct: 192 PVHHRSLSPEPRRGYRDQRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSP 251
Query: 291 ERRTHFRRRHLLAKRELHRRGHPQGHL--INRIHAP 190
R+H R + R H R H +R H+P
Sbjct: 252 HHRSHRSRSRSRSPRRRHSRSRSPTHRRHRSRSHSP 287
>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1002
Score = 34.7 bits (76), Expect = 0.075
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 8/131 (6%)
Frame = -3
Query: 546 PSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPD 367
P++ R PP A ++ Q+ + G +H+ A PAP T + +
Sbjct: 486 PASARPPPSAQALNKTSEQEKEHEKVHVSTGSNHYPASPAPLPASPTAFNNKTRTEVQEE 545
Query: 366 RHVLLHRTQARAGRASDERVP--RVPDERRTHFRRRHL------LAKRELHRRGHPQGHL 211
H L + A G+A + +P R P H R +H A ++ H+ HL
Sbjct: 546 GHELTGTSTAPRGKAQHKTIPIKRKPKHAGKH-RAKHRSTVHENAAFKQYHQTPKKPKHL 604
Query: 210 INRIHAPTDVS 178
+ IH VS
Sbjct: 605 LKYIHRFAKVS 615
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 34.3 bits (75), Expect = 0.099
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 549 QPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDA--EPAPRRHRGRRQPAPLATHH 376
+P RPPR H+R + ++ R+ D DH+D +P P R R R +P P +
Sbjct: 180 RPGYDDRPPRFDHPHERYG-RPLSPPRRGDPYLDHYDRPLDPYPPRERYRDEPPPRDAYG 238
Query: 375 RPD 367
R D
Sbjct: 239 RHD 241
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 33.5 bits (73), Expect = 0.17
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Frame = -3
Query: 474 RRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHRTQARAGRASDERVP--- 304
+R++ G PD + P R R R + + RP R R++ R+ R DER
Sbjct: 581 KRRSQGRPDDKEGRERPGRERSRERHGRERSRERP-RSRERPRSRERSDR-RDERPQRRG 638
Query: 303 ---RVPDERRTHFRRRHLLAKRELHRRGHPQG 217
R P R RR A+R+ R+ P+G
Sbjct: 639 SRGRSPGRREREGERRPRSAERQSRRQDEPKG 670
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 32.3 bits (70), Expect = 0.40
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = -3
Query: 474 RRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHRTQARAGRASDERVP-RV 298
RR+ GG P+PR R R +P+ P L R+++R+G R P R
Sbjct: 104 RRRYGGG-----RSPSPRGRRRSRSRSPVRRRRSPS---LERRSRSRSGSRERRRSPSRS 155
Query: 297 PDERRTHFRRRHLLAKRELHRRGHPQGH 214
P+ RR R KRE H H G+
Sbjct: 156 PERRRE--RSFSNSPKRERHSPDHRNGN 181
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 32.3 bits (70), Expect = 0.40
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Frame = -3
Query: 498 RTQKAMARRRKADGGPDHHDAEPAPRRHRGRR-QPAPLATHHRPDRHVLLHRTQARAGRA 322
++ K R+R + + PRR R +R P+P T R R+ + R
Sbjct: 1039 KSSKERPRKRPRHQSRERRPSSSPPRRSRPQRTSPSPRRTPEDRRRSRGSRRSPSPPKRE 1098
Query: 321 SDERVPRVPDERRTHFRRRHLLA--KRELHRRGHP 223
R P RR R+R L KRE+ RRG P
Sbjct: 1099 PRRRSPSASPPRR-EARKRSLSRSPKREVRRRGSP 1132
Score = 28.3 bits (60), Expect = 6.5
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Frame = -3
Query: 546 PSAVRRPPRAGDTH-QRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRP 370
P RR D+ RR++ RRR++ +A P PRR R R P P
Sbjct: 833 PRRRRRSASGSDSSPHRRSESPRDRRRRSPEHRRRREASP-PRRDRKRYDSPPRRRRRSP 891
Query: 369 DRHVLLHR--TQARAGRASDERVPRVPDERR 283
R + + + R D P P RR
Sbjct: 892 SPPPRRRRRDSYSPSRRRRDSPTPSPPPRRR 922
>SB_48861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 31.5 bits (68), Expect = 0.70
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = -3
Query: 549 QPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPD---HHDAEPAPRRHRGRRQPAPLATH 379
+P+A RR + D +RR K +R+ D GPD +D EP R + A
Sbjct: 1 EPNAKRRNDKEPDV-KRRNDKEPDAKRRDDKGPDANIRYDKEPDANRRYDKEPDAERGND 59
Query: 378 HRPD 367
PD
Sbjct: 60 KEPD 63
>SB_25115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 393 VRVAGALDAGAELAPHRDDPVRHLLYVSEPLLFEFGVG 506
+R GA L P+ DP RH ++EPL+ VG
Sbjct: 118 IRSTGAAQPRLRLRPYAADPARHGAALTEPLVVHLAVG 155
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 31.1 bits (67), Expect = 0.92
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = -3
Query: 429 APRRHRGRRQPAPLATHHRPDRHVLLHRTQ-ARAGRASDERVPRVPDERRTHFRRRHLLA 253
+P RH +P L+ HHRP RH HR + + R S P H RHL +
Sbjct: 227 SPSRHLHCHRPR-LSNHHRPSRHHHCHRPRLSNHHRPSRHLHCHCPRLSNHHRLSRHLHS 285
Query: 252 KR-ELHRRGHP 223
R L HP
Sbjct: 286 NRLRLSIHHHP 296
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 453 PDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHR 346
P + P RH +P L+ HHRP RH+ HR
Sbjct: 356 PSSFQSYHRPSRHLYCHRPR-LSYHHRPSRHLHYHR 390
>SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 583
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 3/117 (2%)
Frame = -3
Query: 525 PRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHR 346
P TH+ R+ K ++ +++ H+ P R R + RP H
Sbjct: 431 PEEERTHEERSHKERSQEKRS------HEKRPHEERSHKERSQEKRSHEKRP------HE 478
Query: 345 TQARAGRASDERVPRVPDERRTHFRRRHLLAK---RELHRRGHPQGHLINRIHAPTD 184
++ R+ +ER R+ H R+ H+ K ++ R+ H + + + H D
Sbjct: 479 ERSHEERSEEERTHEERSHRKYHMRKDHMKKKHKRKDQKRKYHKRKDHMGKDHMRKD 535
>SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 303 RVPDERRTHFRRRHLLAKRELHRRGHP 223
RVP + T RR++L+ + L RRGHP
Sbjct: 284 RVPTTQSTEERRQNLMQRSLLQRRGHP 310
>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2126
Score = 30.7 bits (66), Expect = 1.2
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = -3
Query: 510 THQRRTQKAMARRRKADGGPDHHDAEPAPRR-HRGRRQPAPLATHHRPDRHVLLHRTQAR 334
TH R +A R D G D+H P P R HR R +P+A + P L HR+
Sbjct: 830 THMR---SPLAEERVRDRGRDNHSISPEPNRLHRINR--SPVADDYLP---ALRHRSSVS 881
Query: 333 AGRASDERVPRVPDERRTH 277
R P PD R H
Sbjct: 882 PDPRG--RPPISPDYRGRH 898
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -3
Query: 336 RAGRASDERVPRVPDER--RTHFRRRHLLAKRELHRRGHPQGHLINRIHAPTD 184
+ G SD + R P +R R H RRRH K H R H + + H D
Sbjct: 819 KPGSQSDNELNRPPQDRHRRHHHRRRHHNNKHRKHSREHSRRRHQRKHHKGND 871
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Frame = -3
Query: 447 HHDAEPAPRRHRGRR-QPAPLATHHRPDRHVLLHRTQARAGRASDERVPRVPDERRTHFR 271
H + +RHR + PAP + R R SD DER+
Sbjct: 2784 HEKCDDNSKRHRDKTASPAPSFSSSREISSRYQQDVYRRTSEDSDFGREST-DERKRDMN 2842
Query: 270 RRHLLAKRELHRRGHPQGHLINR 202
R KR+LH R +GH +R
Sbjct: 2843 ERQRQEKRDLHERDADRGHRDDR 2865
>SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)
Length = 219
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +1
Query: 502 LVSISCTRRAPYSGGLEYMTRTMILTCDITLAAVASSPHRKVRAPAR 642
LV S T RAPYS G T+TM +C I +A + K A R
Sbjct: 168 LVDPSKTIRAPYSQGNSNKTKTMKKSCHIYIALFQETTFAKNDADTR 214
>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
Length = 1774
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Frame = -3
Query: 510 THQRRTQKAMARRRKAD-GGPDHHDAEPAPRRHRGRR--QPAPLATHHRPDRHVLLHRTQ 340
T R KA+ + AD P H +PA R G P+ A+ DR + R +
Sbjct: 1438 TEPRIFYKALHQASTADYHQPVKHHKQPALERDSGEEISTPSRPASKKGVDRVAIKDRAE 1497
Query: 339 ARAGRASDERVPRVPDERRTHFRRR 265
A + + PDE +RRR
Sbjct: 1498 AEMSFGQKRTIAQSPDEHFQEWRRR 1522
>SB_23043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 303 RVPDERRTHFRRRHLLAK-RELHRRGHPQGHLINRIHAPTDVSIYSF 166
++PD R H ++R+LL K E H + L N I+ +++S Y +
Sbjct: 68 KLPDRPREHRQKRNLLYKISETHELFKEENQLFNGINKESEMSYYQW 114
>SB_8943| Best HMM Match : LTXXQ (HMM E-Value=0.45)
Length = 415
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 303 RVPDERRTHFRRRHLLAK-RELHRRGHPQGHLINRIHAPTDVSIYSF 166
++PD R H ++R+LL K E H + L N I+ +++S Y +
Sbjct: 68 KLPDRPREHRQKRNLLYKISETHELFKEENQLFNGINKESEMSYYQW 114
>SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)
Length = 502
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 501 RRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHRTQ 340
R + K R R +HH + PR+ RG+ P HRPDR + HR +
Sbjct: 84 RESGKGPRRHRLRPHTNEHHPHDCGPRKDRGKCNPG----DHRPDR--IRHRQE 131
>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 528 PPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPA--PRRHRGRRQPAPL 388
PP + + + +KA AR R+ PD H+ PA PR+H P PL
Sbjct: 763 PPVNHNMREEQMRKAHARERERAELPDAHEPPPALPPRKH---SDPPPL 808
>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = -3
Query: 399 PAPLATHH--RPDRHVLLHRTQARAGRASDERVPRVPDER-RTHFRRRHLLAKRELHRRG 229
P PL+ H RP H R R R R PR+ R R H RR L +R R
Sbjct: 151 PYPLSRRHTRRPRLHTRRPRLHRRRTRLHTRR-PRLHTRRPRLHRRRPRLHTRRPRRHRR 209
Query: 228 HPQGH 214
P+ H
Sbjct: 210 RPRLH 214
>SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 430 WLRIVMIRSAICFTSPSHCFLSSALVSISC 519
WL +VM+ S+ F S S CFL +A+ SC
Sbjct: 163 WLFMVMVTSSQYFISRSVCFLLTAITIGSC 192
>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
Length = 330
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/63 (28%), Positives = 24/63 (38%)
Frame = -3
Query: 384 THHRPDRHVLLHRTQARAGRASDERVPRVPDERRTHFRRRHLLAKRELHRRGHPQGHLIN 205
+HH +H H R S + P E+ +H R H K + HP H N
Sbjct: 167 SHHSSRQHG--HSKSGRTSSYSSDSSPGSGREKSSHSRSVH---KSHSSKHSHPSSHSTN 221
Query: 204 RIH 196
R H
Sbjct: 222 RSH 224
>SB_45437| Best HMM Match : Ribosomal_L15e (HMM E-Value=0.53)
Length = 273
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Frame = -3
Query: 447 HHDAEPAPRRHRGRRQPAPLATHHRPDRHV----LLHRTQARAGRASDERVPRVPD 292
HH P++H H R RH +L R Q AG + RV R PD
Sbjct: 36 HHSKVVHPKKHHSEENDETDKEHVRRKRHPDLAEMLRRIQRNAGEEALVRVKRSPD 91
>SB_28156| Best HMM Match : PAN (HMM E-Value=5.6)
Length = 305
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 312 RVPRVPDERRTHFRRRHLLAKRELHRRGHPQGHLINRIHAPTDVSIYSF 166
R RV T R L +++HR P H+++ IH P D ++ F
Sbjct: 210 RSTRVHPYSLTQGSLRALRNNKQVHRFHTPLDHVVHPIHTPLDHGVHPF 258
>SB_54205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/87 (28%), Positives = 35/87 (40%)
Frame = -3
Query: 492 QKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHRTQARAGRASDE 313
++ M RRR+ D + RR R+ A R + R + R D
Sbjct: 10 RREMDRRREMDRRREMDRRREMDRRREMDRRRAMDRRREMDRRREMDRRREMDRRREMDR 69
Query: 312 RVPRVPDERRTHFRRRHLLAKRELHRR 232
R R D RR RRR + +RE+ RR
Sbjct: 70 R--REMDRRREMDRRREMDRRREMDRR 94
>SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/66 (31%), Positives = 24/66 (36%)
Frame = -3
Query: 570 HGPRHVLQPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAP 391
HGP + P RP D R K RR P HH P R R R +
Sbjct: 375 HGPLSMNPPPI--RPTSFSDNPDRVLGKRTMRREAILNKPRHHLENRIPDRERERCRIDD 432
Query: 390 LATHHR 373
L +HR
Sbjct: 433 LTFYHR 438
>SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)
Length = 1232
Score = 28.7 bits (61), Expect = 4.9
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 2/128 (1%)
Frame = -3
Query: 543 SAVRRPPRAG--DTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRP 370
S VR+ +G HQR+T + R+ + G H + R + H R
Sbjct: 811 SGVRKAHSSGKRSLHQRKTLSSGVRKAHSSGKRPLHQRKTPSSGVRKAHSSGKRSLHQRK 870
Query: 369 DRHVLLHRTQARAGRASDERVPRVPDERRTHFRRRHLLAKRELHRRGHPQGHLINRIHAP 190
+ + + R+ +R + P + R+ H KR LH+R P + + H+
Sbjct: 871 TPSSGVRKAHSSGKRSLHQR--KTPS---SGVRKAHSSGKRSLHQRKTPSSG-VRKAHS- 923
Query: 189 TDVSIYSF 166
+D S +++
Sbjct: 924 SDSSKFTY 931
Score = 28.3 bits (60), Expect = 6.5
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 2/126 (1%)
Frame = -3
Query: 543 SAVRRPPRAG--DTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRP 370
S VR+ +G HQR+T + R+ + G H + R + H R
Sbjct: 769 SGVRKAHSSGKRSLHQRKTPSSGVRKAHSSGKRSLHQRKTPSSGVRKAHSSGKRSLHQRK 828
Query: 369 DRHVLLHRTQARAGRASDERVPRVPDERRTHFRRRHLLAKRELHRRGHPQGHLINRIHAP 190
+ + + R +R + P + R+ H KR LH+R P + + H+
Sbjct: 829 TLSSGVRKAHSSGKRPLHQR--KTPS---SGVRKAHSSGKRSLHQRKTPSSG-VRKAHSS 882
Query: 189 TDVSIY 172
S++
Sbjct: 883 GKRSLH 888
Score = 28.3 bits (60), Expect = 6.5
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 2/126 (1%)
Frame = -3
Query: 543 SAVRRPPRAG--DTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRP 370
S VR+ +G HQR+T + R+ + G H + R H R
Sbjct: 790 SGVRKAHSSGKRSLHQRKTPSSGVRKAHSSGKRSLHQRKTLSSGVRKAHSSGKRPLHQRK 849
Query: 369 DRHVLLHRTQARAGRASDERVPRVPDERRTHFRRRHLLAKRELHRRGHPQGHLINRIHAP 190
+ + + R+ +R + P + R+ H KR LH+R P + + H+
Sbjct: 850 TPSSGVRKAHSSGKRSLHQR--KTPS---SGVRKAHSSGKRSLHQRKTPSSG-VRKAHSS 903
Query: 189 TDVSIY 172
S++
Sbjct: 904 GKRSLH 909
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = -3
Query: 447 HHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHRTQARAGRASDERVPRVPDERRTHFRR 268
H + RH+ R + + H+ RH R++ + R R R E R H R
Sbjct: 29 HETRQHERSRHKTSRHES---SRHKTSRH---ERSRHKTSRHETSRHERSRHETRQHERS 82
Query: 267 RHLLAKRELHR 235
RH ++ E R
Sbjct: 83 RHKTSRHETSR 93
>SB_53274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 28.3 bits (60), Expect = 6.5
Identities = 23/91 (25%), Positives = 33/91 (36%)
Frame = -3
Query: 552 LQPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHR 373
+QP + P R ++R +RRR A PD H +G + H
Sbjct: 498 VQPVLAQMPKRDAKKEEKRKSDGGSRRRPAPDKPDTHPV--TSMMVKGTAFQQDVKDQHE 555
Query: 372 PDRHVLLHRTQARAGRASDERVPRVPDERRT 280
+ + + AR ER PRV RT
Sbjct: 556 KETRAKMDKFFARLDVNKAER-PRVRSRART 585
>SB_40048| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08)
Length = 535
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -3
Query: 450 DHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHRTQARAGRASDERVPRVPDERRTHF- 274
+H AE +HR P+P RH ++ + R G D V VPD F
Sbjct: 471 EHFIAEFNEMQHRNTSSPSPTRCTTGSGRHAVMTSSYDRQG---DVNVEVVPDHDVNWFG 527
Query: 273 RRRHLL 256
R RHL+
Sbjct: 528 RLRHLI 533
>SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018)
Length = 541
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/81 (25%), Positives = 33/81 (40%)
Frame = -3
Query: 546 PSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPD 367
PS+ P+ T R K ++R +DG D A P+ + + +R P P +
Sbjct: 115 PSSHVERPKLSSTIVRSESKGQRKQRVSDGDGDERPALPSVVQVQEKR-PRPTLPASKQA 173
Query: 366 RHVLLHRTQARAGRASDERVP 304
LL A R+ + VP
Sbjct: 174 TGSLLRIAYTEAHRSVSKHVP 194
>SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1)
Length = 432
Score = 27.9 bits (59), Expect = 8.6
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = -3
Query: 522 RAGDTHQRRTQKAMARRRKADGGP-DHHDAEPAPRRHRGRRQ--PAPLATHHRPDRHVLL 352
R D +R K +RRR+ D G +EP PRR + RR+ + R D+
Sbjct: 28 RDDDKKERIKDKDDSRRRRDDRGEIASGSSEPDPRREKRRREGDKDRVKDRERGDKERTK 87
Query: 351 HRTQARAGRASDERVPRVPDERR 283
R + R R D R D+ R
Sbjct: 88 DRDKERP-RERDSEQDRTRDKDR 109
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = -3
Query: 477 RRRKADGGP--DHHDAEPA-PRRHRGRRQP 397
RRR++ G DH A P+ PRR +GRR P
Sbjct: 475 RRRRSSSGDSMDHALARPSSPRRDQGRRNP 504
>SB_41329| Best HMM Match : Arm (HMM E-Value=8.4e-07)
Length = 441
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -1
Query: 710 FVKEGH-QVMLAQSFAKNMGLYGERAGALTFLCGDEATA-AKVMSQVKIMVRVMYSNP 543
FV EG +++L ++N+ + AGAL LC TA AKV++Q V+ P
Sbjct: 30 FVDEGCIELLLELCRSQNLQVKSYAAGALVMLCHQNNTAKAKVIAQGGATTLVLICQP 87
>SB_35959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1136
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = -3
Query: 435 EPAPRRHRGRRQPAPLATHHRPDRHVLLHR--TQARAGRASD 316
+PAPR P PL T DR V R Q R R SD
Sbjct: 782 QPAPRGEGSNLPPLPLHTSGEADRRVETFRAWAQTRPSRRSD 823
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 27.9 bits (59), Expect = 8.6
Identities = 29/101 (28%), Positives = 38/101 (37%)
Frame = -3
Query: 534 RRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVL 355
RR R D + RR ++ R GP E PRR RR+ P DR
Sbjct: 1784 RRGERPRDEYDRRGERP--RDEYDRRGPRDDQREERPRRDDERREERPPRPRSGMDRRD- 1840
Query: 354 LHRTQARAGRASDERVPRVPDERRTHFRRRHLLAKRELHRR 232
R + R DER+ D R R + +R+ RR
Sbjct: 1841 -ERPRPDIDR-RDERLRHEADRRGDRHDERRPMPERKDDRR 1879
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,551,690
Number of Sequences: 59808
Number of extensions: 392272
Number of successful extensions: 1388
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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