Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b07r
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39645-8|AAA80361.1| 414|Caenorhabditis elegans Hypothetical pr... 227 8e-60
AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical... 208 3e-54
U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical pr... 152 2e-37
U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical pr... 137 6e-33
U46671-1|AAA85747.1| 364|Caenorhabditis elegans Hypothetical pr... 122 2e-28
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 36 0.038
U56963-2|AAB38119.2| 326|Caenorhabditis elegans Neuropeptide-li... 32 0.47
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 32 0.47
Z72506-7|CAA96620.2| 293|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical pr... 31 0.81
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 31 1.1
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 30 1.9
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern... 29 2.5
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr... 29 3.3
U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppress... 29 3.3
U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein. 29 3.3
S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein. 29 3.3
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 29 4.3
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 29 4.3
AF125967-1|AAD14759.1| 271|Caenorhabditis elegans Hypothetical ... 28 5.7
U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical pr... 28 7.6
U40959-4|AAA81768.1| 112|Caenorhabditis elegans Hypothetical pr... 28 7.6
>U39645-8|AAA80361.1| 414|Caenorhabditis elegans Hypothetical
protein C14F11.1a protein.
Length = 414
Score = 227 bits (554), Expect = 8e-60
Identities = 104/166 (62%), Positives = 131/166 (78%)
Frame = -1
Query: 710 FVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYG 531
FV++GH ++L+QSFAKNMGLYGER GA + + D AA+V SQVKI++R +YSNPP++G
Sbjct: 248 FVEQGHNIVLSQSFAKNMGLYGERVGAFSVVTSDADEAARVASQVKILIRPLYSNPPVHG 307
Query: 530 ARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCF 351
AR+ IL + L KQWLGDVK MADRIITMR+ L+ + G+ W+HIT+QIGMFCF
Sbjct: 308 ARIASRILADPALNKQWLGDVKLMADRIITMRTTLKDLLAKEGSTRNWEHITNQIGMFCF 367
Query: 350 TGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIHKVT 213
TG+ P+QVE+L KE VYLTKDGRISVAGISS NV Y+A A+H+VT
Sbjct: 368 TGINPQQVEKLIKEHSVYLTKDGRISVAGISSNNVAYLAHALHQVT 413
>AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical
protein C44E4.3 protein.
Length = 419
Score = 208 bits (508), Expect = 3e-54
Identities = 94/166 (56%), Positives = 127/166 (76%)
Frame = -1
Query: 710 FVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYG 531
F+++GH V++AQSFAKNMGLYGER GA + +C A +V SQ++I++R M S PPL+G
Sbjct: 253 FIEQGHNVLVAQSFAKNMGLYGERVGAFSIVCDSAEEAIRVGSQMRIIIRPMISMPPLHG 312
Query: 530 ARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCF 351
AR+ IL+N ELKK WL DVK MADRI +MR+ L+ G++ G+ W HIT+QIGMFCF
Sbjct: 313 ARIASRILSNPELKKSWLEDVKLMADRIKSMRTALKDGLKAEGSTLNWDHITNQIGMFCF 372
Query: 350 TGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIHKVT 213
TG+ +QV++L KE VYLT DGRIS++GI++ NV Y+A+A+H VT
Sbjct: 373 TGINEKQVQKLIKEHSVYLTNDGRISISGINTGNVAYLAKALHDVT 418
>U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical
protein T01C8.5 protein.
Length = 408
Score = 152 bits (369), Expect = 2e-37
Identities = 69/162 (42%), Positives = 105/162 (64%)
Frame = -1
Query: 710 FVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYG 531
FV +G +++++QSFAKN GLY ER G LT + + A A SQ+ +++R +SNPP +G
Sbjct: 236 FVDQGMEMVVSQSFAKNFGLYNERVGNLTVVVNNPAVIAGFQSQMSLVIRANWSNPPAHG 295
Query: 530 ARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCF 351
AR+V ++LT ++QW ++ M+ RI MR+ L + G P W HI QIGMF +
Sbjct: 296 ARIVHKVLTTPARREQWNQSIQAMSSRIKQMRAALLRHLMDLGTPGTWDHIIQQIGMFSY 355
Query: 350 TGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAI 225
TGL QV+ L V+L +DGRI++ G++++NV Y+A+AI
Sbjct: 356 TGLTSAQVDHLIANHKVFLLRDGRINICGLNTKNVEYVAKAI 397
>U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical
protein T01C8.4 protein.
Length = 357
Score = 137 bits (332), Expect = 6e-33
Identities = 64/162 (39%), Positives = 100/162 (61%)
Frame = -1
Query: 710 FVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYG 531
FV++G +++++QSF+KN GLY +R G+LT + + A + SQ+ ++ +SNPP YG
Sbjct: 188 FVEQGLEMIVSQSFSKNFGLYNDRVGSLTVIVNKPSHIANLKSQLTLVNVSNFSNPPAYG 247
Query: 530 ARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCF 351
AR+V EIL + + ++QW +K MA RI R +L + W IT Q G+F +
Sbjct: 248 ARIVHEILKSPKYREQWQNSIKMMAFRIKKTRQELIRELNMLQTSGKWDRITQQSGLFSY 307
Query: 350 TGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAI 225
TGL P QV+ L +YL DGRI++ G++ N++Y+A AI
Sbjct: 308 TGLTPCQVDHLIAHHKIYLLSDGRINICGLNMSNLDYVARAI 349
>U46671-1|AAA85747.1| 364|Caenorhabditis elegans Hypothetical
protein C14E2.2 protein.
Length = 364
Score = 122 bits (295), Expect = 2e-28
Identities = 57/162 (35%), Positives = 96/162 (59%)
Frame = -1
Query: 710 FVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYG 531
FV +G ++ +AQSFAKN+ R G LT + + A + SQ+ + +R+ P +G
Sbjct: 192 FVSDGIELFVAQSFAKNLFFTNPRLGNLTVVVNNAAVIPGIKSQMSLAIRINAFYPTAFG 251
Query: 530 ARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCF 351
A +V ++L+ + ++ W+ ++Q++ RI MR+ L + P W HI Q GMF +
Sbjct: 252 ATIVHKVLSTSARREFWIQSIQQISSRIKQMRTALFDVLSALKTPGSWDHIIRQTGMFSY 311
Query: 350 TGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAI 225
TGL QV+ L + V+L DGRI+++G++ +NV Y+A+AI
Sbjct: 312 TGLTSTQVDHLVRNHKVFLLSDGRINISGLNMKNVEYVAKAI 353
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 35.5 bits (78), Expect = 0.038
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -3
Query: 546 PSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRG---RRQPAP 391
PSA + PP A + R++ ARRR++ P + PAPRR R R PAP
Sbjct: 351 PSASKSPPPAPKRAKSRSKSPPARRRRS---PSASKSPPAPRRRRSPSKSRSPAP 402
Score = 30.7 bits (66), Expect = 1.1
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Frame = -3
Query: 564 PRHVLQPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLA 385
PR PSA + PP A +RR + ++ + PAP R R R A +
Sbjct: 302 PRRRRSPSASKSPPPA----RRRRSPSQSKSPAPKRAKSRSKSPPAPARRR-RSPSASKS 356
Query: 384 THHRPDRHVLLHRT-QARAGRA-SDERVPRVPDERRTHFRRRHLLAKREL 241
P R ++ AR R+ S + P P RR+ + R KRE+
Sbjct: 357 PPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREI 406
>U56963-2|AAB38119.2| 326|Caenorhabditis elegans Neuropeptide-like
protein protein16 protein.
Length = 326
Score = 31.9 bits (69), Expect = 0.47
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 1/108 (0%)
Frame = -3
Query: 522 RAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHRT 343
R+ + H+ + + +KA P+ H A H G + + + H R V H
Sbjct: 110 RSTEHHRVKRSEGHPHEKKATHSPEGHIV--AKDDHHGHEKRSSDSHHGHQKRSVDEHHG 167
Query: 342 QARAGRASDERVPRVPDERRTHFRRRHLLAKRELHR-RGHPQGHLINR 202
+ A D + E H H KR GHP+ HL+ R
Sbjct: 168 HQKKN-AEDHHEHQKRSEHVEHQAEMHEHQKRSTQEVSGHPEHHLVKR 214
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -3
Query: 507 HQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHRTQ 340
+Q++ Q+ ++ G P P +H+ QPA + H P +H H+TQ
Sbjct: 502 YQQQQQQHAQHQQNMSGYPQQQQQPQHPHQHQ---QPASVPMQHHPQQHPSQHQTQ 554
>Z72506-7|CAA96620.2| 293|Caenorhabditis elegans Hypothetical
protein F07A5.6 protein.
Length = 293
Score = 31.1 bits (67), Expect = 0.81
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -3
Query: 555 VLQPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAP---RRHRGRRQPAP 391
+L+P+ RR P DTH RR+ P++ AP RR GR+ P P
Sbjct: 15 LLEPTCRRRLPMPPDTHLRRSSSPRILPTPPPLSPEYRCPSAAPHLERRPSGRQLPRP 72
>Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical
protein F40F8.5 protein.
Length = 420
Score = 31.1 bits (67), Expect = 0.81
Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Frame = -3
Query: 513 DTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHRTQAR 334
DT T RRR D P+ + + HR RR P + H
Sbjct: 264 DTTIDHTGHNHRRRRSEDHDPNDPNVDHTGHNHRRRRD-----QDDDPSDTTIDHTGHNH 318
Query: 333 AGRASDERVPRVPDERRT--HFRRRHLLAKRELHRRGHPQGH 214
R SD+ P P+ T + +RRH++A R GH
Sbjct: 319 RRRRSDDHDPNDPNVDHTGHNHKRRHVIASRSRRTVCSTAGH 360
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = -3
Query: 546 PSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPD 367
PS RR R+ D R + R + P D PRR GRR P P + P+
Sbjct: 83 PSRERRRSRSRDRGAPRRRSRTRSRDRRRSPPRRRDRRTPPRRSPGRRSP-PRSRLPGPE 141
Query: 366 R 364
R
Sbjct: 142 R 142
Score = 27.9 bits (59), Expect = 7.6
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Frame = -3
Query: 534 RRPPRAGD--THQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRH 361
R PPR D T RR+ + R GP+ D P RH + T D+
Sbjct: 111 RSPPRRRDRRTPPRRSPGRRSPPRSRLPGPERRDVMPFNPRHSPPKNAKLELTAEERDQR 170
Query: 360 VLLHRTQARAGRASD 316
LL AR R D
Sbjct: 171 TLLIMQIARDTRPRD 185
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -3
Query: 528 PPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRP 370
PPR + + A RR D HD++ +P R+R RR RP
Sbjct: 160 PPRPSRKIREESPSARNRRSPPRTRRDRHDSDNSPPRNRSRRDSDNSPPRRRP 212
>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
(werner's syndrome) relatedprotein 1 protein.
Length = 1056
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = -1
Query: 494 LKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCFTGLKPEQVERL 318
LKKQ + + + D++ + +R GI P+Q +++ + + CF L+P L
Sbjct: 797 LKKQEVTGLPEKIDQLRSRLDDIRVGIANMHEVAPFQIVSNTV-LDCFANLRPTSASNL 854
>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical
protein C35C5.6 protein.
Length = 1224
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 279 ASVFRQVHVELFRQTLDLLGLESGEAEHAD--LVGDVLPGVRVAGALDAGAELAPHRDDP 452
AS ++ V+ LF+ TL+ G+E GE +G V ++ + A A HRD
Sbjct: 521 ASDYKIVYPVLFK-TLEGYGVELGEPHDIKNKKLGPVKLQIKSLHEIFTAANRAGHRDAA 579
Query: 453 VRHLLYV 473
+RHL ++
Sbjct: 580 IRHLCFL 586
>U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppressor
of activatedras protein 1 protein.
Length = 771
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 587 MSQVKIMVRVMYSNPPLYGARLVQEILTNA 498
M Q ++ R YSN P +GA + Q+I T A
Sbjct: 1 MMQTQVASRAGYSNLPQFGAGIAQDIKTQA 30
>U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein.
Length = 771
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 587 MSQVKIMVRVMYSNPPLYGARLVQEILTNA 498
M Q ++ R YSN P +GA + Q+I T A
Sbjct: 1 MMQTQVASRAGYSNLPQFGAGIAQDIKTQA 30
>S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein.
Length = 771
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 587 MSQVKIMVRVMYSNPPLYGARLVQEILTNA 498
M Q ++ R YSN P +GA + Q+I T A
Sbjct: 1 MMQTQVASRAGYSNLPQFGAGIAQDIKTQA 30
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 477 RRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHV 358
+RR D PD DA + ++ R PAPL TH + HV
Sbjct: 782 KRRVCDTRPDCLDA--SDEQNCADRAPAPLPTHSQQHHHV 819
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 477 RRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHV 358
+RR D PD DA + ++ R PAPL TH + HV
Sbjct: 782 KRRVCDTRPDCLDA--SDEQNCADRAPAPLPTHSQQHHHV 819
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 2/110 (1%)
Frame = -3
Query: 546 PSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPD 367
P R P RA R ++ + R+++ P P+P R R R +P+ P
Sbjct: 77 PKRKREPIRAPSASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRR-RISRSPVRRSRSPP 135
Query: 366 RHVLLHRTQARAGRASDERVPRVPDERRTHFRRRHLLAK--RELHRRGHP 223
R + R R P RR R + + R+ R G P
Sbjct: 136 RRQVSRSRSPPPRRQQRSRSPPPAKRRRDQSRSKSPPRRNYRQRQRSGSP 185
>AF125967-1|AAD14759.1| 271|Caenorhabditis elegans Hypothetical
protein Y49G5B.1 protein.
Length = 271
Score = 28.3 bits (60), Expect = 5.7
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Frame = -3
Query: 564 PRHVLQPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLA 385
P+HVL PSA ++ PR G D+ + E R + ++ + +A
Sbjct: 146 PKHVLFPSADKQDPRVAGVEDEEDDLVPV------GFADYEEVEEKRRTTKHHKEASTVA 199
Query: 384 THHRPDRHVLLHRTQARAGRAS-----DER---VPRVPDERR 283
PD L H T++ RA DE + RVP++R+
Sbjct: 200 P-TTPDGVELPHDTESNVVRADVIDDMDENRRPMSRVPEDRK 240
>U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical
protein F27C1.6 protein.
Length = 647
Score = 27.9 bits (59), Expect = 7.6
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Frame = -1
Query: 539 LYGARLVQEILTNAELKKQWLGDVKQMADRIITM-RSQLRAGIEGAGNPHPWQHITDQIG 363
++G + +LT E++ D+K DR+ M R + GI+ A N + + I + G
Sbjct: 149 MWGDEKTEPVLTEKEMELMKATDIKMAKDRLSQMQRMRAIVGIQEAKNRY-MKKIKSK-G 206
Query: 362 MFCFTGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAE 231
LK E+ ++L KEF + +D + ++ ++ I E
Sbjct: 207 YHRI--LKREKRKQLLKEFDDLVARDPSAAHEKLAEMDLQRIME 248
>U40959-4|AAA81768.1| 112|Caenorhabditis elegans Hypothetical
protein B0310.4 protein.
Length = 112
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Frame = -3
Query: 516 GDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRG--RRQPAPLATHHRPDRH-VLLHR 346
G+TH+ T + R K G H HRG R HR + H HR
Sbjct: 18 GETHRGETHRGETHRGKTHRGETHRGETHRGETHRGETHRGETHRGKTHRGETHRGETHR 77
Query: 345 TQARAG 328
+ R G
Sbjct: 78 GETRRG 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,968,948
Number of Sequences: 27780
Number of extensions: 282449
Number of successful extensions: 1096
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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