Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b07r
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 381  HHRPDRHVLLHRTQAR 334
            HH  ++H  +HRTQ +
Sbjct: 1680 HHNVNKHCTIHRTQVK 1695


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 379 MCCQGCGLPAPSMPARSWLRIVMIRSAICFTSPSHCFLSSALVSISCTRRAPYSGGLE 552
           M  Q  G+ A S+P  S+ + + I + +C T      L  ALV+ + +R   +S  +E
Sbjct: 284 MATQTSGINA-SLPPVSYTKAIDIWTGVCLTFVFGALLEFALVNYA-SRSDMHSDNIE 339


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 379 MCCQGCGLPAPSMPARSWLRIVMIRSAICFTSPSHCFLSSALVSISCTRRAPYSGGLE 552
           M  Q  G+ A S+P  S+ + + I + +C T      L  ALV+ + +R   +S  +E
Sbjct: 284 MATQTSGINA-SLPPVSYTKAIDIWTGVCLTFVFGALLEFALVNYA-SRSDMHSDNIE 339


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 358 NMPIWSVMCCQGCGLPAPSMPARS 429
           N P  SV+   G  +P  S+PA S
Sbjct: 840 NTPTTSVISMSGTTVPITSLPASS 863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,952
Number of Sequences: 438
Number of extensions: 3419
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)