Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b07r
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30970.1 68415.m03777 aspartate aminotransferase, mitochondri... 214 6e-56
At5g19550.1 68418.m02328 aspartate aminotransferase, cytoplasmic... 196 1e-50
At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast... 191 3e-49
At1g62800.2 68414.m07090 aspartate aminotransferase, cytoplasmic... 188 2e-48
At1g62800.1 68414.m07089 aspartate aminotransferase, cytoplasmic... 188 2e-48
At4g31990.2 68417.m04554 aspartate aminotransferase, chloroplast... 148 3e-36
At4g31990.1 68417.m04553 aspartate aminotransferase, chloroplast... 148 3e-36
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 36 0.027
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family... 34 0.081
At1g67300.2 68414.m07660 hexose transporter, putative similar to... 33 0.25
At1g67300.1 68414.m07659 hexose transporter, putative similar to... 33 0.25
At3g52220.1 68416.m05737 expressed protein 31 0.57
At2g29380.1 68415.m03569 protein phosphatase 2C, putative / PP2C... 31 0.57
At1g24706.1 68414.m03104 expressed protein 31 0.75
At5g11470.1 68418.m01339 bromo-adjacent homology (BAH) domain-co... 30 1.3
At2g22810.1 68415.m02707 1-aminocyclopropane-1-carboxylate synth... 30 1.3
At4g13540.1 68417.m02111 expressed protein 29 2.3
At3g06030.1 68416.m00688 NPK1-related protein kinase, putative (... 29 2.3
At2g26610.1 68415.m03193 expressed protein ; expression support... 29 3.0
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 29 4.0
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 29 4.0
At5g40720.1 68418.m04942 expressed protein contains Pfam profile... 29 4.0
At5g13340.1 68418.m01535 expressed protein 29 4.0
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 29 4.0
At5g27690.1 68418.m03321 heavy-metal-associated domain-containin... 28 5.3
At1g79820.2 68414.m09323 hexose transporter, putative similar to... 28 5.3
At1g79820.1 68414.m09322 hexose transporter, putative similar to... 28 5.3
At1g02820.1 68414.m00242 late embryogenesis abundant 3 family pr... 28 5.3
At4g12540.1 68417.m01979 expressed protein 28 7.0
At3g21780.1 68416.m02747 UDP-glucoronosyl/UDP-glucosyl transfera... 28 7.0
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family... 28 7.0
At1g15260.1 68414.m01826 expressed protein EST gb|N65467 comes f... 28 7.0
At3g14660.1 68416.m01855 cytochrome P450, putative similar to GB... 27 9.3
At2g18780.1 68415.m02186 F-box family protein contains F-box dom... 27 9.3
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 27 9.3
>At2g30970.1 68415.m03777 aspartate aminotransferase, mitochondrial
/ transaminase A (ASP1) identical to SP|P46643 Aspartate
aminotransferase, mitochondrial precursor (EC 2.6.1.1)
(Transaminase A) {Arabidopsis thaliana}
Length = 430
Score = 214 bits (522), Expect = 6e-56
Identities = 94/166 (56%), Positives = 129/166 (77%)
Frame = -1
Query: 710 FVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYG 531
F+++GH + ++QS+AKNMGLYG+R G L+ LC D A V SQ++ + R MYSNPPL+G
Sbjct: 262 FLEDGHHIGISQSYAKNMGLYGQRVGCLSVLCEDPKQAVAVKSQLQQLARPMYSNPPLHG 321
Query: 530 ARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCF 351
A+LV IL + ELK WL +VK MADRII MR+ LR +E G+P W+H+T QIGMFC+
Sbjct: 322 AQLVSTILEDPELKSLWLKEVKVMADRIIGMRTTLRESLEKLGSPLSWEHVTKQIGMFCY 381
Query: 350 TGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIHKVT 213
+GL PEQV+RLT E+H+Y+T++GRIS+AG+++ NV Y+A AIH+VT
Sbjct: 382 SGLTPEQVDRLTSEYHIYMTRNGRISMAGVTTGNVGYLANAIHEVT 427
>At5g19550.1 68418.m02328 aspartate aminotransferase, cytoplasmic
isozyme 1 / transaminase A (ASP2) identical to SP|P46645
Aspartate aminotransferase, cytoplasmic isozyme 1 (EC
2.6.1.1) (Transaminase A) {Arabidopsis thaliana}
Length = 405
Score = 196 bits (478), Expect = 1e-50
Identities = 89/163 (54%), Positives = 122/163 (74%)
Frame = -1
Query: 710 FVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYG 531
FV +G + ++AQS+AKNMGLYGER GAL+ +C A+KV SQVK++VR MYS+PP++G
Sbjct: 236 FVADGGECLIAQSYAKNMGLYGERVGALSIVCKSADVASKVESQVKLVVRPMYSSPPIHG 295
Query: 530 ARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCF 351
A +V IL ++++ W ++K+MADRI +MR QL I+ G P W HI QIGMF F
Sbjct: 296 ASIVATILKSSDMYNNWTIELKEMADRIKSMRQQLFEAIQARGTPGDWSHIIKQIGMFTF 355
Query: 350 TGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIH 222
TGL EQVE +TKEFH+Y+T DGRIS+AG+SS+ V ++A+A+H
Sbjct: 356 TGLNKEQVEFMTKEFHIYMTSDGRISMAGLSSKTVPHLADAMH 398
>At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast /
transaminase A (ASP3) (YLS4) identical to SP|P46644
Aspartate aminotransferase, chloroplast precursor (EC
2.6.1.1) (Transaminase A) {Arabidopsis thaliana};
identical to cDNA YLS4 mRNA for aspartate
aminotransferase (ASP3), partial cds GI:13122285
Length = 449
Score = 191 bits (466), Expect = 3e-49
Identities = 87/167 (52%), Positives = 120/167 (71%)
Frame = -1
Query: 710 FVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYG 531
FV +G + ++AQS+AKNMGLYGER GAL+ +C A +V SQ+K+++R MYS+PP++G
Sbjct: 280 FVADGGECLVAQSYAKNMGLYGERVGALSIVCKSADVAGRVESQLKLVIRPMYSSPPIHG 339
Query: 530 ARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCF 351
A +V IL + L +W ++K MADRII+MR QL + G P W HI QIGMF F
Sbjct: 340 ASIVAVILRDKNLFNEWTLELKAMADRIISMRKQLFEALRTRGTPGDWSHIIKQIGMFTF 399
Query: 350 TGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIHKVTS 210
TGL P QV +TKE+H+Y+T DGRIS+AG+SS+ V ++A+AIH V +
Sbjct: 400 TGLNPAQVSFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAIHAVVT 446
>At1g62800.2 68414.m07090 aspartate aminotransferase, cytoplasmic
isozyme 2 / transaminase A (ASP4) identical to aspartate
aminotransferase, cytoplasmic isozyme 2 SP:P46646
[Arabidopsis thaliana]
Length = 405
Score = 188 bits (459), Expect = 2e-48
Identities = 87/167 (52%), Positives = 117/167 (70%)
Frame = -1
Query: 710 FVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYG 531
FV +G + ++AQS+AKNMGLYGER G+LT +C E A KV +QV ++VR MY PP++G
Sbjct: 236 FVADGGECLIAQSYAKNMGLYGERIGSLTIVCTSEDVAKKVENQVLLVVRPMYLTPPIHG 295
Query: 530 ARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCF 351
A +V IL N+++ W ++K MADRII+MR QL A +E G P W HI IGMF F
Sbjct: 296 ASIVATILKNSDMYNDWTIELKGMADRIISMRQQLYAALEARGTPGDWSHIIKHIGMFTF 355
Query: 350 TGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIHKVTS 210
TGL EQV + KE+H+Y+T DGRIS+A +SS+ V +A+AIH V +
Sbjct: 356 TGLSEEQVRLMAKEYHIYMTYDGRISMASLSSKTVPQLADAIHAVVT 402
>At1g62800.1 68414.m07089 aspartate aminotransferase, cytoplasmic
isozyme 2 / transaminase A (ASP4) identical to aspartate
aminotransferase, cytoplasmic isozyme 2 SP:P46646
[Arabidopsis thaliana]
Length = 403
Score = 188 bits (459), Expect = 2e-48
Identities = 87/167 (52%), Positives = 117/167 (70%)
Frame = -1
Query: 710 FVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYG 531
FV +G + ++AQS+AKNMGLYGER G+LT +C E A KV +QV ++VR MY PP++G
Sbjct: 234 FVADGGECLIAQSYAKNMGLYGERIGSLTIVCTSEDVAKKVENQVLLVVRPMYLTPPIHG 293
Query: 530 ARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCF 351
A +V IL N+++ W ++K MADRII+MR QL A +E G P W HI IGMF F
Sbjct: 294 ASIVATILKNSDMYNDWTIELKGMADRIISMRQQLYAALEARGTPGDWSHIIKHIGMFTF 353
Query: 350 TGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIHKVTS 210
TGL EQV + KE+H+Y+T DGRIS+A +SS+ V +A+AIH V +
Sbjct: 354 TGLSEEQVRLMAKEYHIYMTYDGRISMASLSSKTVPQLADAIHAVVT 400
>At4g31990.2 68417.m04554 aspartate aminotransferase, chloroplast /
transaminase A (ASP5) (AAT1) nearly identical to
SP|P46248 Aspartate aminotransferase, chloroplast
precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis
thaliana}
Length = 453
Score = 148 bits (359), Expect = 3e-36
Identities = 69/163 (42%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Frame = -1
Query: 710 FVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYG 531
F + G + +AQS++KN+GLY ER GA+ +C A +V SQ+K + R MYSNPP++G
Sbjct: 283 FAERGMEFFVAQSYSKNLGLYAERIGAINVVCSSADAATRVKSQLKRIARPMYSNPPVHG 342
Query: 530 ARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAG-NPHPWQHITDQIGMFC 354
AR+V ++ + + +W +++ MA RI T+R +L + + W I QIGMF
Sbjct: 343 ARIVANVVGDVTMFSEWKAEMEMMAGRIKTVRQELYDSLVSKDKSGKDWSFILKQIGMFS 402
Query: 353 FTGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAI 225
FTGL Q + +T ++HVY+TKDGRIS+AG+S Y+A+AI
Sbjct: 403 FTGLNKAQSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAI 445
>At4g31990.1 68417.m04553 aspartate aminotransferase, chloroplast /
transaminase A (ASP5) (AAT1) nearly identical to
SP|P46248 Aspartate aminotransferase, chloroplast
precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis
thaliana}
Length = 453
Score = 148 bits (359), Expect = 3e-36
Identities = 69/163 (42%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Frame = -1
Query: 710 FVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYG 531
F + G + +AQS++KN+GLY ER GA+ +C A +V SQ+K + R MYSNPP++G
Sbjct: 283 FAERGMEFFVAQSYSKNLGLYAERIGAINVVCSSADAATRVKSQLKRIARPMYSNPPVHG 342
Query: 530 ARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAG-NPHPWQHITDQIGMFC 354
AR+V ++ + + +W +++ MA RI T+R +L + + W I QIGMF
Sbjct: 343 ARIVANVVGDVTMFSEWKAEMEMMAGRIKTVRQELYDSLVSKDKSGKDWSFILKQIGMFS 402
Query: 353 FTGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAI 225
FTGL Q + +T ++HVY+TKDGRIS+AG+S Y+A+AI
Sbjct: 403 FTGLNKAQSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAI 445
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 35.9 bits (79), Expect = 0.027
Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Frame = -3
Query: 549 QPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAP--RRHRG-------RRQP 397
+P+ R + +RR+ ARRR++ P P+P RRHR RR P
Sbjct: 294 RPTHEGRRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSP 353
Query: 396 APLATHHRPDRHVLLHRTQARAGRASDERVPRVPDERRTH----FRRRHLLAKRELHRRG 229
+P A HR R+ + R R P P RR +RR + L+RR
Sbjct: 354 SPPARRHRSPPPARRRRSPSPPARR--RRSPSPPARRRRSPSPLYRRNR--SPSPLYRRN 409
Query: 228 HPQGHLINR 202
+ L R
Sbjct: 410 RSRSPLAKR 418
Score = 33.9 bits (74), Expect = 0.11
Identities = 27/93 (29%), Positives = 39/93 (41%)
Frame = -3
Query: 561 RHVLQPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLAT 382
RH P A RR + +RR+ ARRR++ + P+P +R R +PLA
Sbjct: 359 RHRSPPPARRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSPSP-LYRRNRSRSPLAK 417
Query: 381 HHRPDRHVLLHRTQARAGRASDERVPRVPDERR 283
R D AR + R+P E+R
Sbjct: 418 RGRSDSPGRSPSPVARLRDPTGARLPSPSIEQR 450
>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
protein
Length = 477
Score = 34.3 bits (75), Expect = 0.081
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -3
Query: 477 RRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRH 361
RR K + +HH A P P HR QP P A + P RH
Sbjct: 384 RRPKGNSALNHHTAPPTPAPHRS--QPHPPAPNPAPPRH 420
>At1g67300.2 68414.m07660 hexose transporter, putative similar to
hexose transporters from Solanum tuberosum [GI:8347246],
Nicotiana tabacum [GI:8347244], Arabidopsis thaliana
[GI:8347250]; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 494
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +1
Query: 271 TEMRPSFVRYTWNSFVRRSTCSGL 342
TE+ P+FVR T+ SF++ +TC GL
Sbjct: 169 TEVSPAFVRGTYGSFIQIATCLGL 192
>At1g67300.1 68414.m07659 hexose transporter, putative similar to
hexose transporters from Solanum tuberosum [GI:8347246],
Nicotiana tabacum [GI:8347244], Arabidopsis thaliana
[GI:8347250]; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 493
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +1
Query: 271 TEMRPSFVRYTWNSFVRRSTCSGL 342
TE+ P+FVR T+ SF++ +TC GL
Sbjct: 169 TEVSPAFVRGTYGSFIQIATCLGL 192
>At3g52220.1 68416.m05737 expressed protein
Length = 237
Score = 31.5 bits (68), Expect = 0.57
Identities = 26/101 (25%), Positives = 41/101 (40%)
Frame = -3
Query: 564 PRHVLQPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLA 385
PR PS + + D R + + + GPD + + R R R+PA
Sbjct: 136 PRPWEDPSTLASSQKE-DADSARLPADTSGVKTVEDGPDDVERDQKKDR-REERKPAKRE 193
Query: 384 THHRPDRHVLLHRTQARAGRASDERVPRVPDERRTHFRRRH 262
R DR R + R+ R SD+R +++ +RRH
Sbjct: 194 KEERHDRREKRERHEKRSARDSDDRKKHKKEKKEK--KRRH 232
>At2g29380.1 68415.m03569 protein phosphatase 2C, putative / PP2C,
putative contains PF00481: Protein phosphatase 2C
domain; similar to protein phpsphatase 2C (PP2C)
(GI:7768151) [Fagus sylvatica].
Length = 362
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 402 QPAPLATHHRPDRHVLLHRTQARAGRASDERVPRV 298
+P PL+T H+PDR L R + GR PRV
Sbjct: 220 KPVPLSTDHKPDRPDELDRIEGAGGRVIYWDCPRV 254
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 31.1 bits (67), Expect = 0.75
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Frame = -3
Query: 570 HGPRHVLQPSAVRRPPRAGDTHQRRTQ-----KAMARRRKADGGPDHHDAEPAPRRHRGR 406
H PRH + S R+ D Q+R + +++RRK D HD+EP R R
Sbjct: 1407 HSPRHEIVTSV-----RSSDRLQKRANAVEDSERISKRRKGDAEHKEHDSEPR-SSDRDR 1460
Query: 405 RQPAPLATHHRPDRHVLLHRTQARAGRASDERVPRVPDER 286
A L + HR Q R+ ER R ER
Sbjct: 1461 SVEARLDLNKTVTDDQSTHRDQDRSKDKGYERQDRDHRER 1500
>At5g11470.1 68418.m01339 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 691
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 412 SMPARSWL-RIVMIRSAICFTSPSHCFLSS 498
S+ AR W + +++ A+ F SPSHC L S
Sbjct: 468 SLDARMWFCKNTILKGAVLFYSPSHCMLYS 497
>At2g22810.1 68415.m02707 1-aminocyclopropane-1-carboxylate synthase
4 / ACC synthase 4 (ACS4) identical to gi:940370
[GB:U23481]
Length = 474
Score = 30.3 bits (65), Expect = 1.3
Identities = 29/120 (24%), Positives = 58/120 (48%)
Frame = -1
Query: 695 HQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYGARLVQ 516
++V + S +K++GL G R GA+ D +AA MS ++ S+ Y L+
Sbjct: 263 NRVHIVCSLSKDLGLPGFRVGAIYSNDKDVISAATKMSSFGLV-----SSQTQY---LLS 314
Query: 515 EILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCFTGLKP 336
+L++ + K +L ++ R+ + +L G+E G + + G+FC+ ++P
Sbjct: 315 SLLSDKKFTKNYL---RENQKRLKNRQRKLVLGLEAIG----IKCLKSNAGLFCWVDMRP 367
>At4g13540.1 68417.m02111 expressed protein
Length = 210
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = -1
Query: 512 ILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCFTGLKPE 333
IL + +W + K++ + + +R ++ EG H W+ + +Q M ++ E
Sbjct: 40 ILALKMAETEWRKERKRLREEVKRLRQKMEEKEEGKAKQHEWEWVVEQ--MCLERAVREE 97
Query: 332 QVER 321
VER
Sbjct: 98 AVER 101
>At3g06030.1 68416.m00688 NPK1-related protein kinase, putative
(ANP3) similar to protein kinase [Nicotiana tabacum]
gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
protein kinase 3 GI:2342426
Length = 651
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 292 VRYTWNSFVRRSTCSGLSPV 351
VR + NS +RRSTCSGL V
Sbjct: 359 VRSSINSLIRRSTCSGLKDV 378
>At2g26610.1 68415.m03193 expressed protein ; expression supported
by MPSS
Length = 1249
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +1
Query: 493 SSALVSISCTRRAPYSGGLEYMTRTMILTCDITLAAVASSPHRKVRAPARSPYRPM 660
+S LVS SC+R + +GG Y+ + +++TC L + S R ++ P R+P R +
Sbjct: 519 NSRLVSYSCSRVSKRTGG--YVNK-LVVTC---LRSGVSRGFRVLQKPERAPIRAL 568
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 28.7 bits (61), Expect = 4.0
Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 4/119 (3%)
Frame = -3
Query: 564 PRHVLQPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLA 385
PR P R PPR + R+ RRR D + + + R RR+
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRS----PRRRSRDDYREKDYRKRSRSRSYDRRE----- 171
Query: 384 THHRPDRHVLLHRTQARAGRASDERVPRV----PDERRTHFRRRHLLAKRELHRRGHPQ 220
H DR HR + R+ AS + RV +E R+H R R R PQ
Sbjct: 172 RHEEKDRD---HRRRTRSRSASPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQ 227
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 28.7 bits (61), Expect = 4.0
Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 4/119 (3%)
Frame = -3
Query: 564 PRHVLQPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLA 385
PR P R PPR + R+ RRR D + + + R RR+
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRS----PRRRSRDDYREKDYRKRSRSRSYDRRE----- 171
Query: 384 THHRPDRHVLLHRTQARAGRASDERVPRV----PDERRTHFRRRHLLAKRELHRRGHPQ 220
H DR HR + R+ AS + RV +E R+H R R R PQ
Sbjct: 172 RHEEKDRD---HRRRTRSRSASPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQ 227
>At5g40720.1 68418.m04942 expressed protein contains Pfam profile
PF01697: Domain of unknown function
Length = 583
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 564 PRHVLQPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDA 436
P H PS +R PPR+G T + A+ R K+ P+ +A
Sbjct: 399 PCHSFGPSGLRDPPRSGVTAAYTCRMALPERHKSIIRPESLNA 441
>At5g13340.1 68418.m01535 expressed protein
Length = 242
Score = 28.7 bits (61), Expect = 4.0
Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 11/116 (9%)
Frame = -3
Query: 546 PSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHR-- 373
PS RR R+ TH+ + R R PAPR+H+ R + + HR
Sbjct: 11 PSHRRRYSRSPVTHRSSRRTRRDRSRSPYTSRHKKSRSPAPRQHQRDRSSSLSPSEHRIA 70
Query: 372 -------PDRHVLLHRTQARAGRASDERVPRVPDERRTHFRRRHLL--AKRELHRR 232
D+ L H +A R +E R+ + R + R K E+ RR
Sbjct: 71 IEVKKEQEDKARLQH--EAELKRLEEETAQRIEEAVRKNVEERMKTEEVKEEIERR 124
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = -3
Query: 453 PDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHRTQARAGRASDERVPRVP 295
P H+ P+P + P P A H+ P ++H +Q + +P +P
Sbjct: 774 PAHYSPPPSPPVYYYNSPPPPPAVHYSPPPPPVIHHSQPPPPPIYEGPLPPIP 826
>At5g27690.1 68418.m03321 heavy-metal-associated domain-containing
protein very low similarity to copper homeostasis factor
from Arabidopsis thaliana [gi:3168840]; contains Pfam
heavy metal associated domain PF00403
Length = 352
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -3
Query: 450 DHHDAE-PAPRRHRGRRQPAPLATHHRPDRH 361
DHH P P H ++Q P T H P RH
Sbjct: 220 DHHIIHGPPPHLHHHQQQNHPYPTVHSPPRH 250
>At1g79820.2 68414.m09323 hexose transporter, putative similar to
hexose transporter GI:8347246 from (Solanum tuberosum);
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 495
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Frame = +1
Query: 271 TEMRPSFVRYTWNSFVRRSTCSGL-------SPVKQNMPIWSV 378
TE+ P++VR T+ S + +TC GL P K N+ W +
Sbjct: 172 TEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRI 214
>At1g79820.1 68414.m09322 hexose transporter, putative similar to
hexose transporter GI:8347246 from (Solanum tuberosum);
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 495
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Frame = +1
Query: 271 TEMRPSFVRYTWNSFVRRSTCSGL-------SPVKQNMPIWSV 378
TE+ P++VR T+ S + +TC GL P K N+ W +
Sbjct: 172 TEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRI 214
>At1g02820.1 68414.m00242 late embryogenesis abundant 3 family
protein / LEA3 family protein similar to late
embryogenis abundant protein 5 GI:2981167 from
[Nicotiana tabacum]; contains Pfam profile PF03242: Late
embryogenesis abundant protein
Length = 91
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 369 DRHVLLHRTQARAGRASDERVPRVPDERRTHFR 271
D V + RAG AS E+ P VPD + ++R
Sbjct: 37 DGSVSTAEMKKRAGEASSEKAPWVPDPKTGYYR 69
>At4g12540.1 68417.m01979 expressed protein
Length = 461
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 553 TPTLRCTAPASCRRYSPTPNSKSNGSE 473
TP L+ + P SC + P P S G +
Sbjct: 261 TPCLKLSPPKSCTMFKPVPESSQLGKQ 287
>At3g21780.1 68416.m02747 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 431
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = -1
Query: 614 GDEATAAKVMSQVKIMVRVMYSNPPLYGARLVQEILTNAELKKQWLGDVKQMADRIITMR 435
G +T + V + + +Y+ +V+E+ E+KK W GD+ I+T
Sbjct: 313 GWNSTLESLWFGVPMAIWPLYAEQKFNAFEMVEELGLAVEIKKHWRGDLLLGRSEIVT-A 371
Query: 434 SQLRAGI 414
++ GI
Sbjct: 372 EEIEKGI 378
>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 185
Score = 27.9 bits (59), Expect = 7.0
Identities = 23/85 (27%), Positives = 31/85 (36%)
Frame = -3
Query: 546 PSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPD 367
P RR + H+R+ R G P P+P HR R+ A +P
Sbjct: 73 PENRRRRNHHHNDHRRQPPPLPENRAATAGQPP----SPSPDNHRHHRRTTTAAVAGQPP 128
Query: 366 RHVLLHRTQARAGRASDERVPRVPD 292
H RT A AG + P P+
Sbjct: 129 HH---RRTTAAAGTTTIAGQPPPPE 150
>At1g15260.1 68414.m01826 expressed protein EST gb|N65467 comes from
this gene
Length = 178
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 448 IRSAICFTSPSHCFLSSALVS-ISCTRRAPYSGGLEYMTRTMILTCDITLAAVASSPHRK 624
I+S IC + + + L+S SC+RR P + ++ CD AVA + H+K
Sbjct: 23 IKSTICSSDYKNLPNDTPLLSPYSCSRRCPEDSQTQTKESYTVICCD---TAVADTTHQK 79
>At3g14660.1 68416.m01855 cytochrome P450, putative similar to
GB:Q05047 from [Catharanthus roseus]
Length = 512
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = -1
Query: 614 GDEATAAKVMSQVKIMVRVMYSNPPLYGARLVQEILTNAELKKQWLGDV 468
GD+ A+ ++Q+K+M ++Y LY +VQ LT A K+ LGD+
Sbjct: 357 GDKEPDAEGLNQLKVMTMILYEVLRLY-PPVVQ--LTRAIHKEMQLGDL 402
>At2g18780.1 68415.m02186 F-box family protein contains F-box domain
Pfam:PF00646
Length = 370
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 341 KPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYI 237
K E ++ +KEFHV + D R+S+ ++ N N I
Sbjct: 55 KEEAKKKQSKEFHVVMMLDFRVSLFSLNLLNPNPI 89
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 27.5 bits (58), Expect = 9.3
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Frame = -3
Query: 564 PRHVLQPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRH-----RGRRQ 400
PR L P PR G + +RR+ + RRR G P + PRR RGR
Sbjct: 215 PRERLSPRRRSPLPRRGLSPRRRSPDSPHRRR--PGSPIRRRGDTPPRRRPASPSRGRSP 272
Query: 399 PAPLATHHR 373
+P +R
Sbjct: 273 SSPPPRRYR 281
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,140,019
Number of Sequences: 28952
Number of extensions: 258742
Number of successful extensions: 980
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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