Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b07f
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7)          101   4e-22
SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)                85   3e-17
SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_53258| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)                30   1.2  
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)           29   2.8  
SB_20938| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)                  28   6.6  
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)                 28   6.6  
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)              27   8.7  
SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)                    27   8.7  

>SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7)
          Length = 130

 Score =  101 bits (242), Expect = 4e-22
 Identities = 43/64 (67%), Positives = 55/64 (85%)
 Frame = +3

Query: 171 GCTGLRASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVR 350
           G   +R SS WW++V+ GPPD ILG+TEA+K+DT+PKK+NLGVGAYRDD GKP+VLPSV+
Sbjct: 42  GYAAVRLSS-WWSHVEAGPPDAILGVTEAFKRDTNPKKMNLGVGAYRDDTGKPYVLPSVK 100

Query: 351 KAEE 362
           KA +
Sbjct: 101 KASD 104


>SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)
          Length = 512

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 6/103 (5%)
 Frame = +3

Query: 189 ASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEIL 368
           AS+  + +V + P D +  +   Y KD  P K+NLGVGAYRD++GKP+VLP V K E  L
Sbjct: 2   ASTNLFKDVPLVPTDHVFHVMACYNKDKDPSKINLGVGAYRDNDGKPWVLPVVSKVETQL 61

Query: 369 HSRG-----LNHEYAPISGEATYTDAVAKLAFGEDSPVI-KNR 479
            ++G     LNHEY  I G   ++DA  KL  G D P I +NR
Sbjct: 62  -AQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAIAQNR 103



 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
 Frame = +3

Query: 306 YRDDEGKPFVLPSVRKAEEILHSRG-----LNHEYAPISGEATYTDAVAKLAFGEDSPVI 470
           YRD++GKP+VLP V K E  L ++G     LNHEY  I G   ++DA  KL  G D P I
Sbjct: 106 YRDNDGKPWVLPVVSKVETQL-AQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAI 164

Query: 471 KNRSNCTVQTLSGTGALRLGLEFITKHYAKAKEIWLPTPT 590
                C +Q++SGTG++ LGL+F+ + Y   K  ++  PT
Sbjct: 165 AQNRVCGIQSISGTGSVFLGLKFLYQFY-NCKTAYISKPT 203


>SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
 Frame = +3

Query: 306 YRDDEGKPFVLPSVRKAEEILHSRG-----LNHEYAPISGEATYTDAVAKLAFGEDSPVI 470
           YRD++GKP+VLP V K E  L ++G     LNHEY  I G   ++DA  KL  G D P I
Sbjct: 2   YRDNDGKPWVLPVVSKVETQL-AQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAI 60

Query: 471 -KNR 479
            +NR
Sbjct: 61  AQNR 64


>SB_53258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 811

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 455 RQSCHQK*EQLYCTDIVRHWRTPTRTRVHNETLR 556
           +Q CH K EQL   D+   ++T    +++NET R
Sbjct: 148 KQVCHDKYEQLPYDDVQNFFKTHISLKINNETFR 181


>SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)
          Length = 912

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -1

Query: 401 GSILMVESSTVKNFFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVCFCN 246
           G ++ V  S   N   L D+   +     +S    PK Y++ + +  +CFCN
Sbjct: 411 GRLIEVVHSHNLNAVLLPDQLSGRRPKWEISFLGLPKFYWYNIMIYAICFCN 462


>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +3

Query: 231 DVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGLNH 389
           DV       YK+D    + NLGV AYR     P +LP  +  +EI++++G+ +
Sbjct: 84  DVACDSYHKYKEDVQLLR-NLGVKAYRFSISWPRILP--KGTKEIINTKGIEY 133


>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
          Length = 671

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 346 TEGKTNGFPSSSLYAPTPRFTFL 278
           ++ KT GF SSS   P PRF F+
Sbjct: 377 SQEKTKGFDSSSWMKPNPRFMFM 399


>SB_20938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 520 SAPVPDNVCTVQLLLFLMTGLSSPKASLATASVYVASPLMGAYSWLS 380
           + PV  N+CTV ++ F++ GL      +AT +  V+  +     W++
Sbjct: 24  AVPV-SNICTVFIIYFILRGLLHKTVKVATVARVVSDIIFSHPYWIT 69


>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = -2

Query: 490  VQLLLFLMTGLSSPKASLATASVYVASPLMGAYSWLSPLL*RISSAFLTEGKTNGFPSSS 311
            V  + FLM GL+         +V V   L+ A++W+S +   +   F ++       S  
Sbjct: 873  VNQVFFLMLGLNQISGFCVAVAVIVHYFLLAAFAWMSVMAYDVMKTFASKAVLQASNSRK 932

Query: 310  LYAP--TPRFTFLGCVSFL 260
             +       FTF   V FL
Sbjct: 933  TFIKYCCAAFTFPAIVVFL 951


>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
          Length = 1498

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -1

Query: 371  VKNFFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLL--VCFCNA*DYIWRTHLNIVPPG 198
            V +F+ L+ R+ +++FSL  ++ ++ K  + R+C  +  V    A  + W   L+I P G
Sbjct: 1142 VVHFYSLAQRKHSRYFSLAQALSNDSKSGYRRVCAFVHQVVRTAALTH-WALSLDISPKG 1200


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 312 DDEGKPFVLPSVRKAEEILHSRGLNHEYAPISGEA 416
           D + KP     + + +E +H++ + H+YA  SGE+
Sbjct: 171 DIDQKPTANSKMDEKKEFIHAKYIKHQYAQKSGES 205


>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
          Length = 863

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 499 VCTVQLLLFLMTGLSSPKASLATASVYVASPLM 401
           +CTV + L   T L   K SL   S+Y+  PL+
Sbjct: 680 ICTVTMSLGFFTPLIPGKISLTLFSIYILLPLL 712


>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 499 VCTVQLLLFLMTGLSSPKASLATASVYVASPLM 401
           +CTV +L+ + T L   K S+    +YV SPL+
Sbjct: 154 ICTVTILVGVFTPLIPLKISVTLFLIYVFSPLL 186


>SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)
          Length = 621

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = -2

Query: 481 LLFLMTGLSSPKASLATASVYVASPLMGAYSWLSPLL*RISSAFLTEGKTNG 326
           + FLM G++S +      ++ +   L+ A+ W++ +   +   F  +G+  G
Sbjct: 568 VFFLMVGVNSVRGLCKVVAIGIHFFLLAAFLWMAVMAYDVHRTFTNQGEMTG 619


>SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)
          Length = 947

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
 Frame = +3

Query: 207  NNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRG-- 380
            NN Q      ++G+TE++KK  + KK N G  A             V K  +++ S    
Sbjct: 758  NNHQSDDIIKVVGVTESHKKKENKKKDNDGADA-------------VNKVIKVIESDDGH 804

Query: 381  LNHEYAPISGEATYTDAVAKLAFGEDSPVI----KNRSNCTVQTLSGTGALRLG 530
            +N E  PI+  +   + + KL    D  +      + S   V + SG+G+   G
Sbjct: 805  VNEEEGPITNHSDDVNEIIKLVESRDGHMTITDESSESGLLVDSGSGSGSKESG 858


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,003,047
Number of Sequences: 59808
Number of extensions: 410581
Number of successful extensions: 938
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)