Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b07f
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.2  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   3.9  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   3.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.0  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 331 NGFPSSSLYAPTPRFTFLGCVSFLYASVM 245
           N  P  S Y       FLGC  FL+A+++
Sbjct: 283 NSLPKVS-YIKASEIWFLGCTIFLFAAMV 310


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 218 DGSARCNLRHYRSIQEG 268
           DG AR N+ H++ I+ G
Sbjct: 535 DGPARYNIIHFKQIEPG 551


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
          protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 97 KLSNTGKIITNYVVLLKDE 41
          ++   G+I+TNY+  + DE
Sbjct: 32 RILQNGRILTNYIKCMLDE 50


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
          protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 97 KLSNTGKIITNYVVLLKDE 41
          ++   G+I+TNY+  + DE
Sbjct: 32 RILQNGRILTNYIKCMLDE 50


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 256 ASVMPKITSGGPI 218
           ASV P++ SG P+
Sbjct: 578 ASVQPQVISGNPV 590


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,550
Number of Sequences: 438
Number of extensions: 3115
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)