Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b06f
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0382 - 5076673-5077774,5078122-5078186                           29   1.9  
05_01_0234 - 1743784-1744017,1748103-1749068                           28   4.3  
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431...    27   7.5  
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440...    27   10.0 
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194...    27   10.0 

>04_01_0382 - 5076673-5077774,5078122-5078186
          Length = 388

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 339 KVKPTPPPVRRTLANCVDPRTRTALTRLP 253
           K  PTPPP RR   N +D R +    RLP
Sbjct: 256 KKLPTPPPKRRLGINMLDGRNKLVEYRLP 284


>05_01_0234 - 1743784-1744017,1748103-1749068
          Length = 399

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -1

Query: 288 DPRTRTA-LTRLPAGAVNLTLTTRELIVAARLTTKLRKSLSLEVILPILKALALSVDLGS 112
           DP+   A  ++L    V + +  R+      L  +LRKSL + +I P L+  ALSV+  +
Sbjct: 196 DPKANIASASQLRGLGVKIRMAKRDR--GGILDVRLRKSLEIRLIPPELEVPALSVEEAT 253

Query: 111 ATSL 100
           A  L
Sbjct: 254 AVLL 257


>01_07_0359 -
           43042675-43042758,43042956-43043024,43043099-43043159,
           43043260-43043768,43044545-43045153,43045697-43045972,
           43046581-43046769,43047006-43047116,43047621-43047908,
           43047990-43048041,43048648-43048824,43049249-43049314,
           43049675-43049929,43050071-43050577,43050807-43050886,
           43050974-43051207
          Length = 1188

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 345 FTKVKPTPPPVRRTLANCVDPRTRTALTRLPAGAVN 238
           F+  +  P P+RR +A+C+ P      T  P  A +
Sbjct: 32  FSSARKPPEPLRRAVADCLSPPAPHTHTHAPPPAAS 67


>06_01_0609 +
           4404287-4405023,4405496-4405631,4405724-4405876,
           4405985-4406128,4406224-4406375,4406453-4406552,
           4406653-4406775,4406876-4407037,4407190-4407247,
           4407324-4407502,4408294-4408402,4408567-4408637,
           4408891-4408986,4409727-4409803,4410983-4411066,
           4411473-4411607,4411744-4411819,4413072-4413167,
           4413580-4413671,4413745-4413868,4413966-4414052
          Length = 996

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 342 TKVKPTPPPVRRTLANCVDPRTRT 271
           T VKPTP P R+  A    P+T T
Sbjct: 78  TPVKPTPTPKRKRAAPSPSPKTPT 101


>05_03_0653 + 16617121-16617359,16618892-16618955,16619455-16619485,
            16619577-16619848,16620528-16620633,16620715-16620872,
            16621527-16621714,16621786-16621855,16622814-16622984,
            16624363-16624838,16625625-16625871,16626158-16626490,
            16627329-16627412,16627751-16627843,16627966-16628025,
            16628582-16628680,16628830-16628970,16629207-16629287,
            16629895-16629966,16631160-16631231,16632083-16632176,
            16632257-16632339,16632455-16632532,16632914-16632970,
            16633055-16633132,16633236-16633357,16633463-16633623,
            16634419-16634495,16634570-16634683,16634857-16634958,
            16635368-16635436,16635437-16635577,16635936-16636109,
            16636934-16637063,16637137-16637276,16637369-16637446,
            16637813-16637911,16638408-16638803
          Length = 1749

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 324  PPPVRRTLANCVDPRTRTALTRLPAGAVNLTLTTRELI 211
            PP +  +    V PRTRT+L+ LP   + L L T  L+
Sbjct: 1694 PPHIVSSAIEKVKPRTRTSLSMLP--LLRLLLPTTHLV 1729


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,262,843
Number of Sequences: 37544
Number of extensions: 218752
Number of successful extensions: 602
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)