Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b04r
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1476 - 30399317-30399347,30399636-30399722,30400035-304001...    29   3.0  
03_02_0895 + 12230683-12230844,12230937-12230991,12231106-122311...    29   3.0  
02_03_0134 - 15596379-15597689                                         29   4.0  
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734...    29   4.0  
12_02_1202 - 26957254-26957778                                         28   6.9  
04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985     28   6.9  
02_05_0310 + 27769988-27770830                                         28   6.9  
01_01_0769 - 5944910-5946613,5946768-5946887,5948243-5948300,594...    28   6.9  
01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912           28   6.9  

>06_03_1476 -
           30399317-30399347,30399636-30399722,30400035-30400192,
           30400276-30400497,30400744-30400881,30400977-30401105,
           30401346-30401369,30401569-30401614,30401692-30401773,
           30401836-30401955,30402039-30402072
          Length = 356

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +2

Query: 131 ADLETAVGPSQCAATVTIASTSSFCVECAELDMRFDRRSPHVKVNG 268
           A  +  VG     A++ +   SSF +EC+++ +   +++ H K+ G
Sbjct: 293 AQSDKKVGQKHTGASIFVLIYSSFAMECSKMMVELHQKAGHGKLTG 338


>03_02_0895 +
           12230683-12230844,12230937-12230991,12231106-12231169,
           12231292-12231334,12231509-12231607,12231710-12231778,
           12231912-12232245,12232317-12232471,12232592-12233287
          Length = 558

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -3

Query: 747 ARQLRAATPIW*Q*LMVSSSGALSAEAQCSPHARCSP 637
           ARQ   A   W      SSSGA +A     PH RC P
Sbjct: 366 ARQAAPAPGYWPNCGFASSSGAGTASRSFLPHGRCPP 402


>02_03_0134 - 15596379-15597689
          Length = 436

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 89  VRSSPCAREAPRHDADLETAVGPSQCAATVTIASTSSF 202
           V SSP  + +P HDA    A  PS   +T T  S S+F
Sbjct: 38  VPSSPDRKLSPSHDASSSNAYRPSSSFSTRTGTSRSTF 75


>01_02_0118 +
           11271020-11271293,11272849-11273145,11273226-11273439,
           11273563-11273672,11273746-11273945,11274439-11274501,
           11274560-11274663,11274868-11275055,11275129-11275328,
           11275463-11275693
          Length = 626

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 590 KSSSDSRHKPME--LWRFSPHCLQKHHP 513
           +S SDS HK ++   W F P  + +HHP
Sbjct: 144 QSDSDSSHKKLQGLSWSFPPSIVLEHHP 171


>12_02_1202 - 26957254-26957778
          Length = 174

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 217 CTFHAEGTGTC-NGDSGSALARTDSG 143
           C+F+  GTG+C  GD   AL+ T SG
Sbjct: 75  CSFNGAGTGSCATGDCAGALSCTLSG 100


>04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985
          Length = 773

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 62  PEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTIAST 193
           PEG + D   + S C R  P     L+TA+G    A TVT+A+T
Sbjct: 346 PEGRNGDGRKKGSGCKRHFP-----LDTALGVG-LALTVTLATT 383


>02_05_0310 + 27769988-27770830
          Length = 280

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 211 FHAEGTGTCNGDSGSALARTDSGLQVGIVSWG 116
           F  +G G C  +S S L R  S L+  + SWG
Sbjct: 79  FDHDGGGGCGPESFSGLLRELSELEQSVASWG 110


>01_01_0769 -
           5944910-5946613,5946768-5946887,5948243-5948300,
           5948544-5948627,5949356-5949456,5949562-5949745,
           5950746-5950774,5951134-5951226
          Length = 790

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 674 RRLSAHRTLGAHRCSLHCCCIHTWKSLWKSSSDSRHKPMELWRFSPH 534
           R LS H T+G    +++CCC H        S  + HKP E W  S H
Sbjct: 687 RGLSQH-TVGRIENTMNCCCSHP-----SVSGIANHKP-EYWSGSDH 726


>01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912
          Length = 487

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 231 LISSSAHSTQKELVLAMVTVAAHWLGPTAVSKSASCRGASLAHGELLTCSSESA 70
           L+ SSA S    L   +   AA WL     + S+S   A+ A G  L   S +A
Sbjct: 67  LVGSSAASRPDMLASVLSHYAAKWLPDVVAASSSSSSPATSASGRFLPPESPTA 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,267,807
Number of Sequences: 37544
Number of extensions: 492258
Number of successful extensions: 1654
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1654
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)