Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b04r
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 67 1e-11
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 66 3e-11
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 36 0.041
U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical pr... 31 0.88
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 30 2.0
AC024812-7|AAF59548.2| 419|Caenorhabditis elegans Hypothetical ... 30 2.0
Z50004-1|CAA90291.1| 396|Caenorhabditis elegans Hypothetical pr... 29 2.7
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 3.5
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 29 3.5
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 3.5
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 3.5
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 29 3.5
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 3.5
U41992-5|AAA83356.1| 549|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical p... 28 8.2
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr... 28 8.2
U42832-2|AAA83572.1| 558|Caenorhabditis elegans Udp-glucuronosy... 28 8.2
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 67.3 bits (157), Expect = 1e-11
Identities = 70/240 (29%), Positives = 103/240 (42%), Gaps = 7/240 (2%)
Frame = -2
Query: 751 GSQAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTV 572
GS+++ S P V + + + CGGS++ VLTAAHC F + + V
Sbjct: 61 GSESSPHSWPWTVQLLSRLGHHR--CGGSLIDPNFVLTAAHC----FAKDRRPTSYSVRV 114
Query: 571 GTNQWNSGGSLHTVSRNITHPHY-VSNTIKNDLGILITSSNIVFNNRVRPISL-SFDYVP 398
G ++ + GS H V+ HP Y + D I+ + + RPI L S V
Sbjct: 115 GGHR-SGSGSPHRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLPAVE 173
Query: 397 GGVPVRVAGWGRVRANGALST-NLLEINVRTIDGQTCVRTAAQAAIDLNVRAPPVEPHIE 221
+ V V GWG +LS L EI+V + C + P +
Sbjct: 174 NRLCV-VTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIG---RIHLPSM----- 224
Query: 220 LCTFHAEG-TGTCNGDSGSAL--ARTDSGLQVGIVSWGFPCAR-GAPDMFVRVSAFRSWL 53
LC ++ G +C GDSG L AR G+VSWG CAR G P ++ V + +W+
Sbjct: 225 LCAGYSYGKIDSCQGDSGGPLMCARDGHWELTGVVSWGIGCARPGMPGVYGNVHSASTWI 284
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 66.1 bits (154), Expect = 3e-11
Identities = 71/250 (28%), Positives = 109/250 (43%), Gaps = 12/250 (4%)
Frame = -2
Query: 751 GSQAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTV 572
G + G+ P A+ N ++ CG S+L ++TAAHC F + + V
Sbjct: 30 GFETVPGAFPWTAALRNKA-TKAHHCGASILDKTHLITAAHC----FEEDERVSSYEVVV 84
Query: 571 G---TNQWNSGGSLHTVSRNITHPHYVSNTIKNDLGIL-ITSSNIVFNNRVRPISL---S 413
G NQ + + + R +P Y + +D+ IL I I FN +PI L
Sbjct: 85 GDWDNNQTDGNEQIFYLQRIHFYPLY-KDIFSHDIAILEIPYPGIEFNEYAQPICLPSKD 143
Query: 412 FDYVPGGVPVRVAGWGRVRANGALSTNLLEINVRTIDGQTCVRTAAQAAIDLNVRAPPVE 233
F Y PG V V+GWG + A L + I+ CV ++Q ++ A
Sbjct: 144 FVYTPGRQCV-VSGWGSMGLRYA--ERLQAALIPIINRFDCV-NSSQIYSSMSRSA---- 195
Query: 232 PHIELCTFHAE-GTGTCNGDSGSALA-RTDSGLQV--GIVSWGFPCA-RGAPDMFVRVSA 68
C + E G +C GDSG A R + G V G++SWG CA + P ++ V+
Sbjct: 196 ----FCAGYLEGGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAP 251
Query: 67 FRSWLQQNIS 38
+ SW+ I+
Sbjct: 252 YLSWISAIIN 261
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 35.5 bits (78), Expect = 0.041
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = -2
Query: 679 VCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVG--TNQW---NSGGSLHTVSRN 521
+CGG+++T + VLTAAHC F G G W NS GSL RN
Sbjct: 61 ICGGTLITLKHVLTAAHCFQKHFGAKKEGGEENSMSGRYCESWVIYNSEGSLEIYFRN 118
Score = 34.7 bits (76), Expect = 0.071
Identities = 44/180 (24%), Positives = 64/180 (35%), Gaps = 8/180 (4%)
Frame = -2
Query: 616 VFTLGSLSGNLRLTVGTNQWNSGGSLHTVSRNITHPHYVSNTIK-NDLGILITSSNIVFN 440
V T+G++ L G G +SR Y ++ + ND+ IL S I
Sbjct: 131 VVTVGAMCTRLEQKYGCVNEKQNGKTLKISRFAIGDFYKTHCEQGNDIVILELESTIDDV 190
Query: 439 NRVRPISLSF---DYVPGGVPVRVAGWGRVRANGALSTNLLEINVRTIDGQTCVRTAAQA 269
L F + G V GWG G + I V T+ +T
Sbjct: 191 EGANYACLPFLPEVNIQSGANVTSFGWGSDPGKGFDNAAFPMIQVLTLATETLATCEENW 250
Query: 268 AIDLNVRAPPVEPHIELCTFHAEGTGTCNGDSGSALA--RTDSGLQ--VGIVSWGFPCAR 101
+ P CT E C+GDSG L ++DS + + IVS+G C +
Sbjct: 251 GTSI--------PFDSFCTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIAIVSYGSDCVQ 302
>U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical
protein B0286.6 protein.
Length = 279
Score = 31.1 bits (67), Expect = 0.88
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -2
Query: 217 CTFHAEGTGTCNGDSGSALARTDS----GLQVGIVSWGFPC 107
CT +C+GDSGS + RT + VG++S G PC
Sbjct: 197 CTSAVNRGLSCDGDSGSGVVRTSDTRNVQVLVGVLSAGMPC 237
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 88 CQELPVRKGSPTTRCRLGDRCR-SEPMRCHCH-HCKYQFLL 204
CQ LP G CR D+C S P C+ + HC Y +L
Sbjct: 1090 CQCLPGFSGDGFINCRGADQCNPSNPSACYQNAHCVYDAIL 1130
>AC024812-7|AAF59548.2| 419|Caenorhabditis elegans Hypothetical
protein Y54E10BR.8 protein.
Length = 419
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +1
Query: 175 CHHCKYQFLLRGMCRARYEVRQEEPSR*GQWPPGPQ---SSRKSDHQ 306
CH+C QF RG + + E QW G Q SS KS H+
Sbjct: 279 CHYCTRQFSQRGALKTHMRLHTGERPFVCQWECGKQFASSSAKSHHE 325
>Z50004-1|CAA90291.1| 396|Caenorhabditis elegans Hypothetical
protein C02B4.2 protein.
Length = 396
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 139 GDRCRSEPMRCHCHHCKY-QFLLRGMCRARYEVRQ 240
GD + MRC C HC+Y + ++ GM R + +
Sbjct: 71 GDCIIDKSMRCSCRHCRYKKCIIAGMDRGELSMER 105
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 44 VLLQPGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTI 184
V + GPEG + E V + +A ++ +E G C AT+T+
Sbjct: 2935 VQTRTGPEGHITQELVLDNVTPEDAGKYTCIVENTAGKDTCEATLTV 2981
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 44 VLLQPGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTI 184
V + GPEG + E V + +A ++ +E G C AT+T+
Sbjct: 2295 VQTRTGPEGHITQELVLDNVTPEDAGKYTCIVENTAGKDTCEATLTV 2341
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 44 VLLQPGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTI 184
V + GPEG + E V + +A ++ +E G C AT+T+
Sbjct: 2935 VQTRTGPEGHITQELVLDNVTPEDAGKYTCIVENTAGKDTCEATLTV 2981
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 44 VLLQPGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTI 184
V + GPEG + E V + +A ++ +E G C AT+T+
Sbjct: 2935 VQTRTGPEGHITQELVLDNVTPEDAGKYTCIVENTAGKDTCEATLTV 2981
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 44 VLLQPGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTI 184
V + GPEG + E V + +A ++ +E G C AT+T+
Sbjct: 2295 VQTRTGPEGHITQELVLDNVTPEDAGKYTCIVENTAGKDTCEATLTV 2341
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 44 VLLQPGPEGADSDEHVRSSPCAREAPRHDADLETAVGPSQCAATVTI 184
V + GPEG + E V + +A ++ +E G C AT+T+
Sbjct: 2935 VQTRTGPEGHITQELVLDNVTPEDAGKYTCIVENTAGKDTCEATLTV 2981
>U41992-5|AAA83356.1| 549|Caenorhabditis elegans Hypothetical
protein F32E10.5 protein.
Length = 549
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +1
Query: 127 RCRLGDRCRSEPMRCHCHHCKYQFLLRGMCRARYEVRQEEPSR*GQWPPGPQSSRKSDHQ 306
RC++ C +EP + H KY+F+ MC R+ +PS+ G W P + +
Sbjct: 219 RCQI-TTC-TEPFQIVLCHPKYEFM--NMCSFLLAPRRGQPSQEGVWIPREIAKQLEREN 274
Query: 307 WFSH*SPEDS 336
F +DS
Sbjct: 275 GFERNDYDDS 284
>Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical
protein C53A5.13 protein.
Length = 681
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -2
Query: 238 VEPHIELCTFHAEGTGTCNGDSGSALARTDSGLQVGIVSWGF 113
+EPH++ C F+ +GT C+ +++ + + + +VS GF
Sbjct: 571 IEPHLKTCGFNEQGTFKCD----MSISEVFTQIPIVLVSAGF 608
>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
protein F37D6.1 protein.
Length = 1227
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +2
Query: 89 VRSSPCAREAPRHDADLETAVGPSQCAATVTIASTSSFCVECAELDMRFDRRSPHVKVNG 268
VR P R + + GPS + V I S ++CV C+ D + +NG
Sbjct: 605 VRPQPLPRTSSKSTIPYGKTSGPSSTSTQVGIFSYHTYCVHCSVDQEVSDDLKEKIPLNG 664
>U42832-2|AAA83572.1| 558|Caenorhabditis elegans
Udp-glucuronosyltransferase protein57 protein.
Length = 558
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 573 TVRRRFPERLPSVNTATMQ*AAVSTERAVSTEPPQTKLLMKIPL 704
T+++RF + P+VNT Q AA EPP+ L IP+
Sbjct: 243 TIKKRF-KNFPNVNTLKQQSAAYFVNTDPLLEPPRALPLNVIPV 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,698,151
Number of Sequences: 27780
Number of extensions: 386435
Number of successful extensions: 1323
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -