Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b04r
(752 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g08840.3 68416.m01027 D-alanine--D-alanine ligase family simi... 31 0.62
At3g08840.2 68416.m01026 D-alanine--D-alanine ligase family simi... 31 0.62
At3g08840.1 68416.m01028 D-alanine--D-alanine ligase family simi... 31 0.62
At5g05630.1 68418.m00614 amino acid permease family protein weak... 29 4.4
At3g18770.1 68416.m02382 expressed protein 28 5.8
At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containi... 28 5.8
At1g75030.1 68414.m08715 pathogenesis-related thaumatin family p... 28 7.7
>At3g08840.3 68416.m01027 D-alanine--D-alanine ligase family similar
to D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase)
(Swiss-Prot:O51218) [Borrelia burgdorferi]; similar to
D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase).
(Swiss-Prot:P95803) [Streptococcus mutans]
Length = 845
Score = 31.5 bits (68), Expect = 0.62
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -2
Query: 718 MVAMTNGI-FIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWNSGGS 542
M +M G+ F + G V TAA + + SLS + + +G N++ G+
Sbjct: 1 MASMATGVSFSMTSGIGEGGYDVHRVATAARTTLKLNQKNSLSESTCMLLGMNKYRGSGA 60
Query: 541 LHTVSRNITHPHYVSNTIK 485
+ TVS+ + + +S +++
Sbjct: 61 IRTVSKAVGYGQEMSKSLR 79
>At3g08840.2 68416.m01026 D-alanine--D-alanine ligase family similar
to D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase)
(Swiss-Prot:O51218) [Borrelia burgdorferi]; similar to
D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase).
(Swiss-Prot:P95803) [Streptococcus mutans]
Length = 937
Score = 31.5 bits (68), Expect = 0.62
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -2
Query: 718 MVAMTNGI-FIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWNSGGS 542
M +M G+ F + G V TAA + + SLS + + +G N++ G+
Sbjct: 1 MASMATGVSFSMTSGIGEGGYDVHRVATAARTTLKLNQKNSLSESTCMLLGMNKYRGSGA 60
Query: 541 LHTVSRNITHPHYVSNTIK 485
+ TVS+ + + +S +++
Sbjct: 61 IRTVSKAVGYGQEMSKSLR 79
>At3g08840.1 68416.m01028 D-alanine--D-alanine ligase family similar
to D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase)
(Swiss-Prot:O51218) [Borrelia burgdorferi]; similar to
D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase).
(Swiss-Prot:P95803) [Streptococcus mutans]
Length = 519
Score = 31.5 bits (68), Expect = 0.62
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -2
Query: 718 MVAMTNGI-FIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWNSGGS 542
M +M G+ F + G V TAA + + SLS + + +G N++ G+
Sbjct: 1 MASMATGVSFSMTSGIGEGGYDVHRVATAARTTLKLNQKNSLSESTCMLLGMNKYRGSGA 60
Query: 541 LHTVSRNITHPHYVSNTIK 485
+ TVS+ + + +S +++
Sbjct: 61 IRTVSKAVGYGQEMSKSLR 79
>At5g05630.1 68418.m00614 amino acid permease family protein weak
similarity to y+LAT1a (amino acid transporter) [Mus
musculus] GI:3970791; contains Pfam profile PF00324:
Amino acid permease
Length = 490
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 448 VFNNRVRPISLSFDYVPGGVPVRVAGWGRVRANGALSTNLLEINVR 311
V +N + PI L DY+ G+P+ +G RV A L+ L +N R
Sbjct: 142 VIDNALYPI-LFLDYLKSGIPILGSGIPRVAAILVLTVALTYLNYR 186
>At3g18770.1 68416.m02382 expressed protein
Length = 625
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 44 VLLQPGPEGADSDEHVRSSPCAREAPRHDADLET 145
V P P +DS V S PC+R P H +D+ T
Sbjct: 324 VSCSPSPTRSDSHALV-SHPCSRHLPPHPSDIPT 356
>At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile: PF00515 TPR Domain (5
copies)
Length = 1064
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = -2
Query: 664 VLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWNSGGSLHTVSRNITHPHYVSNTIK 485
V + RS +T+ IVA+ L +LS L+ G G H +PH SN I+
Sbjct: 640 VASTRSYITSQEEIVAMHYLIALSKLLKTGAGDFLGYEKGIAHLSKAIHMYPH--SNLIR 697
Query: 484 NDLGILI 464
N LG ++
Sbjct: 698 NLLGYIL 704
>At1g75030.1 68414.m08715 pathogenesis-related thaumatin family
protein identical to thaumatin-like protein [Arabidopsis
thaliana] GI:2435406; contains Pfam profile: PF00314
Thaumatin family
Length = 246
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -2
Query: 217 CTFHAEGTGTC-NGDSGSALARTDSGL 140
C F A G GTC GD G L T G+
Sbjct: 79 CNFDASGHGTCVTGDCGGVLKCTGGGV 105
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,864,757
Number of Sequences: 28952
Number of extensions: 357984
Number of successful extensions: 998
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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