Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b04f
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    75   6e-16
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 74.9 bits (176), Expect = 6e-16
 Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 12/173 (6%)
 Frame = +2

Query: 134 ARIVGGSQAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGN 313
           +RIVGG+       P M+A     +    +CG ++++ R VLTAAHCI+   T       
Sbjct: 159 SRIVGGTNTGINEFP-MMAGIKRTYEPGMICGATIISKRYVLTAAHCIIDENTT-----K 212

Query: 314 LRLTVGTNQWNS-----GGSLHTVSRNITHPHY----VSNTIKNDLGILITSSNIVFNNR 466
           L + VG + W+S        LH++++ I HP Y      +   ND+ +L T  +I F ++
Sbjct: 213 LAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDK 272

Query: 467 VRPISLSFDYVP---GGVPVRVAGWGRVRANGALSTNLLEINVRTIDGQTCVR 616
           V P  L F +      G  V V GWG    NG LS  L +  +  +    C +
Sbjct: 273 VGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECYK 325


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 320 LTVGTNQWNSGGSLHTVSRNI 382
           L+ GTN W+SG       RN+
Sbjct: 263 LSGGTNHWDSGRRKSAAQRNV 283


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 475 RPDAVIENDVRGSYENT 425
           RPD V+ N+  G+YE T
Sbjct: 112 RPDIVLYNNADGNYEVT 128


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 373 QKHHPPSLRVQYHQERLGYSHNFLEHRFQ 459
           Q H   S     +QER GY  +  +H+ Q
Sbjct: 105 QHHQDSSSEHASNQERFGYFSSLKDHQHQ 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,788
Number of Sequences: 438
Number of extensions: 4155
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)