Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b04f
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g08840.3 68416.m01027 D-alanine--D-alanine ligase family simi... 31 0.50
At3g08840.2 68416.m01026 D-alanine--D-alanine ligase family simi... 31 0.50
At3g08840.1 68416.m01028 D-alanine--D-alanine ligase family simi... 31 0.50
At5g05630.1 68418.m00614 amino acid permease family protein weak... 29 3.5
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 28 4.7
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 28 4.7
At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containi... 28 4.7
At4g10020.1 68417.m01639 short-chain dehydrogenase/reductase (SD... 28 6.1
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim... 27 8.1
At1g65640.1 68414.m07446 DegP protease, putative contains simila... 27 8.1
>At3g08840.3 68416.m01027 D-alanine--D-alanine ligase family similar
to D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase)
(Swiss-Prot:O51218) [Borrelia burgdorferi]; similar to
D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase).
(Swiss-Prot:P95803) [Streptococcus mutans]
Length = 845
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 182 MVAMTNGI-FIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWNSGGS 358
M +M G+ F + G V TAA + + SLS + + +G N++ G+
Sbjct: 1 MASMATGVSFSMTSGIGEGGYDVHRVATAARTTLKLNQKNSLSESTCMLLGMNKYRGSGA 60
Query: 359 LHTVSRNITHPHYVSNTIK 415
+ TVS+ + + +S +++
Sbjct: 61 IRTVSKAVGYGQEMSKSLR 79
>At3g08840.2 68416.m01026 D-alanine--D-alanine ligase family similar
to D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase)
(Swiss-Prot:O51218) [Borrelia burgdorferi]; similar to
D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase).
(Swiss-Prot:P95803) [Streptococcus mutans]
Length = 937
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 182 MVAMTNGI-FIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWNSGGS 358
M +M G+ F + G V TAA + + SLS + + +G N++ G+
Sbjct: 1 MASMATGVSFSMTSGIGEGGYDVHRVATAARTTLKLNQKNSLSESTCMLLGMNKYRGSGA 60
Query: 359 LHTVSRNITHPHYVSNTIK 415
+ TVS+ + + +S +++
Sbjct: 61 IRTVSKAVGYGQEMSKSLR 79
>At3g08840.1 68416.m01028 D-alanine--D-alanine ligase family similar
to D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase)
(Swiss-Prot:O51218) [Borrelia burgdorferi]; similar to
D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase).
(Swiss-Prot:P95803) [Streptococcus mutans]
Length = 519
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 182 MVAMTNGI-FIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWNSGGS 358
M +M G+ F + G V TAA + + SLS + + +G N++ G+
Sbjct: 1 MASMATGVSFSMTSGIGEGGYDVHRVATAARTTLKLNQKNSLSESTCMLLGMNKYRGSGA 60
Query: 359 LHTVSRNITHPHYVSNTIK 415
+ TVS+ + + +S +++
Sbjct: 61 IRTVSKAVGYGQEMSKSLR 79
>At5g05630.1 68418.m00614 amino acid permease family protein weak
similarity to y+LAT1a (amino acid transporter) [Mus
musculus] GI:3970791; contains Pfam profile PF00324:
Amino acid permease
Length = 490
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 452 VFNNRVRPISLSFDYVPGGVPVRVAGWGRVRANGALSTNLLEINVR 589
V +N + PI L DY+ G+P+ +G RV A L+ L +N R
Sbjct: 142 VIDNALYPI-LFLDYLKSGIPILGSGIPRVAAILVLTVALTYLNYR 186
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 167 PELPGYPPQYERSGPHARRRWTCH 96
P+ PG PPQ+ GPHA + H
Sbjct: 362 PQGPGGPPQWGSRGPHAPHPYDYH 385
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 158 PGYPPQYERSGPHARRRWTC-HLQAWGGPRQPQRAP 54
P PP + G H W H+Q GGP Q Q+ P
Sbjct: 312 PRPPPPPQAMGMHQHGGWPPQHMQQQGGPPQQQQPP 347
>At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile: PF00515 TPR Domain (5
copies)
Length = 1064
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = +2
Query: 236 VLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWNSGGSLHTVSRNITHPHYVSNTIK 415
V + RS +T+ IVA+ L +LS L+ G G H +PH SN I+
Sbjct: 640 VASTRSYITSQEEIVAMHYLIALSKLLKTGAGDFLGYEKGIAHLSKAIHMYPH--SNLIR 697
Query: 416 NDLGILI 436
N LG ++
Sbjct: 698 NLLGYIL 704
>At4g10020.1 68417.m01639 short-chain dehydrogenase/reductase (SDR)
family protein similar to sterol-binding dehydrogenase
steroleosin GI:15824408 from [Sesamum indicum]
Length = 389
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 176 GGCPELPGYPPQYERSGPH 120
GG P +P PP+Y S PH
Sbjct: 341 GGPPRVPASPPRYTASPPH 359
>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative
similar to DEIH-box RNA/DNA helicase [Arabidopsis
thaliana] GI:5881579; contains Pfam profiles PF04408:
Helicase associated domain (HA2), PF00271: Helicase
conserved C-terminal domain
Length = 1299
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +2
Query: 155 QAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHCIV 280
Q+ G H +V TNGI +R V GSV SV H IV
Sbjct: 274 QSKGGRHSSVVFCTNGILLRVLVGKGSV---SSVSDITHIIV 312
>At1g65640.1 68414.m07446 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 518
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +2
Query: 239 LTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWNSGGSLHTVS--RNITHPHYVSNTI 412
+T+ S+ A + +V VFT+ S+ L+ Q SGGS +S + +T+ H V++ I
Sbjct: 63 VTSSSIDFAVNSVVKVFTVYSMPSVLQPWRNWPQQESGGSGFVISGKKILTNAHVVADHI 122
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,991,458
Number of Sequences: 28952
Number of extensions: 320792
Number of successful extensions: 951
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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