Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b02r
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RR80 Cluster: Putative uncharacterized protein PY0085...    37   0.53 
UniRef50_P59573 Cluster: Glycyl-tRNA synthetase beta chain; n=1;...    33   4.9  
UniRef50_Q23UA6 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_Q7RR80 Cluster: Putative uncharacterized protein PY00854;
           n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY00854 - Plasmodium yoelii yoelii
          Length = 337

 Score = 36.7 bits (81), Expect = 0.53
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 522 SNKNVDFVCHNT*QTRHHIMCHTYYDCAFNRANIDSHPITXKLSTSN 662
           +NK  +F+C+N     H +     YD  FN+ NID+     ++  S+
Sbjct: 210 TNKECEFICYNDNSNNHDVYDENQYDQLFNKDNIDNEEEASQIENSS 256


>UniRef50_P59573 Cluster: Glycyl-tRNA synthetase beta chain; n=1;
           Buchnera aphidicola (Baizongia pistaciae)|Rep:
           Glycyl-tRNA synthetase beta chain - Buchnera aphidicola
           subsp. Baizongia pistaciae
          Length = 697

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +2

Query: 131 IHINMCTPLSMLPNFY*KLNIMDILLNVKTLNFKLIKRFLYGIYE---YS*SVCRILVPN 301
           IHIN+   L      Y K+N  DI+L  K + F L  R +Y IY+   Y+ S+ + ++ N
Sbjct: 497 IHINLYDLLEKSLKTYKKINNSDIILK-KEIQF-LFNR-IYSIYDKNKYNHSIIKSILEN 553

Query: 302 NYLVRINID 328
           N  +  NID
Sbjct: 554 NTKILTNID 562


>UniRef50_Q23UA6 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 769

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 24/75 (32%), Positives = 36/75 (48%)
 Frame = -2

Query: 402 HFYLMK*SLLEQ*LQLVIFYFFHSKSIFILTR*LFGTKIRQTLQEYSYIP*RNRLINLKL 223
           + Y  K SL        IFY+F+ K  F LT    G KI    +E++++  +     L L
Sbjct: 290 YIYKSKLSLENGSFDSQIFYYFYGKKDF-LTNGQLGLKISSIFKEFNFLQFKIDQKALIL 348

Query: 222 RVLTFRRISIIFSFQ 178
            +L    ISI F+F+
Sbjct: 349 SILITYGISIYFAFK 363


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,729,415
Number of Sequences: 1657284
Number of extensions: 10927970
Number of successful extensions: 22221
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22202
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)