Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b02r
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0238 + 14665813-14668798,14669088-14669125                       30   2.0  
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053...    29   3.4  

>08_02_0238 + 14665813-14668798,14669088-14669125
          Length = 1007

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 599 LCI*SSQHRQSSDNXKIIDIKSFIYIVS 682
           LC+ SS+HR +S N KII I   + +VS
Sbjct: 745 LCLASSRHRHTSRNLKIIGISVALVLVS 772


>02_05_1074 -
           33904518-33904697,33904886-33904985,33905085-33905311,
           33905511-33908384,33908467-33908643,33908786-33909008,
           33909727-33909806,33910657-33910817,33910892-33910937,
           33911129-33911251,33911730-33911804,33911920-33912120
          Length = 1488

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 481 NVHDKCGTLETFSLVTKMWISFVIIH 558
           N+HD+  T    S + K W++F +IH
Sbjct: 111 NLHDRLSTRPFLSKIEKKWLAFQLIH 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,144,772
Number of Sequences: 37544
Number of extensions: 247202
Number of successful extensions: 358
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)