Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b02r
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_18338| Best HMM Match : MFS_1 (HMM E-Value=0.038)                   28   8.1  

>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 194 LYSAFNRNLVASIKVYTYLCV*NNTLVRLCVPILM 90
           LY  F R  V SI    YLC+ N     +C+P+ +
Sbjct: 884 LYKVFERLDVVSIHTVGYLCLKNTAPEIVCIPMTL 918


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 97  IGTHSLTRVLFHTHKYVYTFIDATKFL 177
           I TH L  V+ +THK +   I+A K L
Sbjct: 477 INTHKLLTVIINTHKLLMVIINAHKLL 503


>SB_18338| Best HMM Match : MFS_1 (HMM E-Value=0.038)
          Length = 451

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 127 FHTHKYVYTFIDATKFLLKAEYNGYSPK 210
           F+ H Y+Y  I A  FL  + ++ Y PK
Sbjct: 166 FYLHFYLYAIIGAGSFLFASLFHVYEPK 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,901,853
Number of Sequences: 59808
Number of extensions: 343620
Number of successful extensions: 602
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)