Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11b02r
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r...    28   6.6  
At1g23420.1 68414.m02934 inner no outer protein (INO) identical ...    28   6.6  

>At4g29380.1 68417.m04197 protein kinase family protein / WD-40
           repeat family protein contains Pfam PF00400: WD domain,
           G-beta repeat; contains Pfam PF00069: Protein kinase
           domain; contains PF02985: HEAT repeat; similar to
           adaptor protein (GI:1817584) [Homo sapiens]; similar to
           VPS15 protein (GI:6103009) [Pichia pastoris]
          Length = 1494

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 481 NVHDKCGTLETFSLVTKMWISFVII 555
           N+HD+  T    SLV K W++F ++
Sbjct: 110 NLHDRLSTRPFLSLVEKKWLAFQLL 134


>At1g23420.1 68414.m02934 inner no outer protein (INO) identical to
           INNER NO OUTER (INO) [Arabidopsis thaliana] GI:6684816
          Length = 231

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 463 EVKK*KNVHDKCGTLETFSLVTKMWISFVIIHNKR 567
           E+++ K  +      E FSL  K W  F   HNKR
Sbjct: 149 EIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAHNKR 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,561,255
Number of Sequences: 28952
Number of extensions: 235061
Number of successful extensions: 384
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)