BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11b02f (594 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 30 0.22 SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 27 2.1 SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 26 3.6 SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 3.6 SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 26 3.6 SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 26 4.8 SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 4.8 SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 6.3 SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 6.3 SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 8.3 SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.3 >SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizosaccharomyces pombe|chr 2|||Manual Length = 166 Score = 30.3 bits (65), Expect = 0.22 Identities = 22/75 (29%), Positives = 30/75 (40%) Frame = +1 Query: 208 SKMDALADILQPYKEIVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMT 387 SK AL +++ YKE+ + +T G F WD QG PF GG+ Sbjct: 2 SKAMALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDG----TPFEGGLYPA 57 Query: 388 ILNLQYGYILRDDTM 432 L Y L T+ Sbjct: 58 TLKFPSDYPLGPPTL 72 >SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 487 Score = 27.1 bits (57), Expect = 2.1 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Frame = +1 Query: 460 LNIVY----VLIYFNYTQQKVKVWAQIGLAGAVSAALIGYAQTEDPKL 591 LN VY VL N+T ++ + WA G G+ L+ Y + PKL Sbjct: 270 LNCVYWGRKVLSDINWTIREGERWALTGSNGSGKTTLLAYVVGDHPKL 317 >SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2|||Manual Length = 673 Score = 26.2 bits (55), Expect = 3.6 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -1 Query: 390 DGHNNTSEERHDADPASAALLVYVPAY 310 DG N T+ HD D + LLVY P Y Sbjct: 513 DGKNTTAGN-HDVDNNTPPLLVYFPNY 538 >SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||Manual Length = 673 Score = 26.2 bits (55), Expect = 3.6 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -1 Query: 390 DGHNNTSEERHDADPASAALLVYVPAY 310 DG N T+ HD D + LLVY P Y Sbjct: 513 DGKNTTAGN-HDVDNNTPPLLVYFPNY 538 >SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces pombe|chr 2|||Manual Length = 780 Score = 26.2 bits (55), Expect = 3.6 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -1 Query: 414 YVTILQVEDGHNNTSEERHDADPASAA 334 Y + EDG N +EE + +DPA +A Sbjct: 67 YDAVSATEDGWTNIAEEFNQSDPARSA 93 >SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schizosaccharomyces pombe|chr 1|||Manual Length = 720 Score = 25.8 bits (54), Expect = 4.8 Identities = 12/55 (21%), Positives = 26/55 (47%) Frame = -1 Query: 531 TDLSPNLDLLLGVIEVYQHVDDI*GQTEHVDLNHGVVTEYVTILQVEDGHNNTSE 367 T L+ +L ++ DD+ E++D +++ + I V+D H+ T + Sbjct: 467 TILNSRTSVLAAANPIFGRYDDMKTPGENIDFQSTILSRFDMIFIVKDEHDETKD 521 >SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosaccharomyces pombe|chr 1|||Manual Length = 533 Score = 25.8 bits (54), Expect = 4.8 Identities = 9/11 (81%), Positives = 10/11 (90%) Frame = -2 Query: 377 TPPRNGMMPIP 345 +PPRN MMPIP Sbjct: 466 SPPRNAMMPIP 476 >SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |Schizosaccharomyces pombe|chr 3|||Manual Length = 660 Score = 25.4 bits (53), Expect = 6.3 Identities = 8/24 (33%), Positives = 15/24 (62%) Frame = +3 Query: 279 NHWADVLRQFHMLGHIQAGQHSRD 350 NHW + +H+ G ++AG ++D Sbjct: 525 NHWEAQIVSYHISGLLEAGLEAKD 548 >SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 1254 Score = 25.4 bits (53), Expect = 6.3 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = -1 Query: 405 ILQVEDGHNNTSEERHDADPASAALLVYVPAYETAGEHLPN 283 I++ +DGH E RH ASAA +VP G PN Sbjct: 979 IIEQKDGHLYFEELRHPCINASAA-STFVPNDVVLGGESPN 1018 >SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 384 Score = 25.0 bits (52), Expect = 8.3 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -2 Query: 125 YNFHFMYSIRRDLLNSQLKMFLKTKNST*ITAYSLT 18 Y + I L NSQ+ +K+K ++ IT YSL+ Sbjct: 283 YEQPLLAQISEFLFNSQISPKIKSKKNSLITNYSLS 318 >SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 471 Score = 25.0 bits (52), Expect = 8.3 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = +1 Query: 367 LGGVVMTILNLQYGYILRDDTMIQVNMFGLALNIVYVLIY 486 L G++ L L + Y+ R T + + G LNIV ++I+ Sbjct: 325 LAGIINVPLLLIFSYLTRYLTDRDIILLGCCLNIVCMVIH 364 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,266,906 Number of Sequences: 5004 Number of extensions: 45261 Number of successful extensions: 104 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 104 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 258201856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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