Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11b02f
(594 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 30 0.22
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 27 2.1
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 26 3.6
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 3.6
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 26 3.6
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 26 4.8
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 4.8
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 6.3
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 6.3
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 8.3
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.3
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 30.3 bits (65), Expect = 0.22
Identities = 22/75 (29%), Positives = 30/75 (40%)
Frame = +1
Query: 208 SKMDALADILQPYKEIVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMT 387
SK AL +++ YKE+ + +T G F WD QG PF GG+
Sbjct: 2 SKAMALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDG----TPFEGGLYPA 57
Query: 388 ILNLQYGYILRDDTM 432
L Y L T+
Sbjct: 58 TLKFPSDYPLGPPTL 72
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +1
Query: 460 LNIVY----VLIYFNYTQQKVKVWAQIGLAGAVSAALIGYAQTEDPKL 591
LN VY VL N+T ++ + WA G G+ L+ Y + PKL
Sbjct: 270 LNCVYWGRKVLSDINWTIREGERWALTGSNGSGKTTLLAYVVGDHPKL 317
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 390 DGHNNTSEERHDADPASAALLVYVPAY 310
DG N T+ HD D + LLVY P Y
Sbjct: 513 DGKNTTAGN-HDVDNNTPPLLVYFPNY 538
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 390 DGHNNTSEERHDADPASAALLVYVPAY 310
DG N T+ HD D + LLVY P Y
Sbjct: 513 DGKNTTAGN-HDVDNNTPPLLVYFPNY 538
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 414 YVTILQVEDGHNNTSEERHDADPASAA 334
Y + EDG N +EE + +DPA +A
Sbjct: 67 YDAVSATEDGWTNIAEEFNQSDPARSA 93
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = -1
Query: 531 TDLSPNLDLLLGVIEVYQHVDDI*GQTEHVDLNHGVVTEYVTILQVEDGHNNTSE 367
T L+ +L ++ DD+ E++D +++ + I V+D H+ T +
Sbjct: 467 TILNSRTSVLAAANPIFGRYDDMKTPGENIDFQSTILSRFDMIFIVKDEHDETKD 521
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2
Query: 377 TPPRNGMMPIP 345
+PPRN MMPIP
Sbjct: 466 SPPRNAMMPIP 476
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 279 NHWADVLRQFHMLGHIQAGQHSRD 350
NHW + +H+ G ++AG ++D
Sbjct: 525 NHWEAQIVSYHISGLLEAGLEAKD 548
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 405 ILQVEDGHNNTSEERHDADPASAALLVYVPAYETAGEHLPN 283
I++ +DGH E RH ASAA +VP G PN
Sbjct: 979 IIEQKDGHLYFEELRHPCINASAA-STFVPNDVVLGGESPN 1018
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 125 YNFHFMYSIRRDLLNSQLKMFLKTKNST*ITAYSLT 18
Y + I L NSQ+ +K+K ++ IT YSL+
Sbjct: 283 YEQPLLAQISEFLFNSQISPKIKSKKNSLITNYSLS 318
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 367 LGGVVMTILNLQYGYILRDDTMIQVNMFGLALNIVYVLIY 486
L G++ L L + Y+ R T + + G LNIV ++I+
Sbjct: 325 LAGIINVPLLLIFSYLTRYLTDRDIILLGCCLNIVCMVIH 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,906
Number of Sequences: 5004
Number of extensions: 45261
Number of successful extensions: 104
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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